Small-Molecule RAF265 as an Antiviral Therapy Acts against PEDV Infection

✅ 全文

小分子RAF265作为抗PEDV感染的抗病毒治疗药物

作者 Jing Wang; Wen-Jun Tian; Cui-Cui Li; Xiu-Zhong Zhang; Kai Fan; Song-Li Li; Xiao-Jia Wang 期刊 Viruses 发表日期 2022 卷/期/页码 Vol. 14(10) ISSN 1999-4915 DOI 10.3390/v14102261 类型 原创研究 (Original Research)

📄 中文摘要 Chinese Abstract

中文
猪流行性腹泻病毒(PEDV)是一种有包膜的单股正链RNA病毒,属于冠状病毒科α冠状病毒属,可引起新生仔猪急性腹泻、呕吐、脱水及高死亡率,给养猪业造成重大经济损失。由于PEDV具有高度变异性,导致田间疫情呈现异质性,现有的防控措施——包括自体疫苗、商品疫苗及肠道内容物饲喂——效果欠佳。鉴于RNA病毒的高突变率及较低的耐药性产生可能性,靶向病毒复制所必需的宿主细胞机制是一种极具前景的策略,而目前尚无获批用于PEDV的特异性抗病毒药物,因此亟需开发有效的抗病毒疗法。

📋 英文结构化总结 English Structured Summary

全文整理

EN

Background:

Porcine epidemic diarrhea virus (PEDV), an enveloped, single-stranded positive-sense RNA virus belonging to the genus *Alphacoronavirus* in the family *Coronaviridae*, causes acute diarrhea, vomiting, dehydration, and high mortality in newborn piglets, leading to significant economic losses in the pig industry. Current control measures—including autogenous and commercial vaccines as well as intestinal content feeding—are insufficient due to the hypervariability of PEDV, resulting in heterogeneous field outbreaks. There is an urgent need for effective antiviral therapies, especially since no specific antiviral drugs are currently approved for PEDV. Targeting host cellular machinery essential for viral replication offers a promising strategy, given the high mutation rate of RNA viruses and the likelihood of reduced drug resistance.

Methods:

The study evaluated the antiviral efficacy of RAF265—a small-molecule kinase inhibitor originally developed as an anticancer agent—against PEDV in vitro and in vivo. Vero cells were infected with PEDV strain CV777 and treated with varying concentrations of RAF265; viral yields were quantified via TCID₅₀ assays, and viral protein expression was assessed by Western blotting. In vivo experiments involved 7-day-old piglets challenged with PEDV and treated orally with RAF265 (25 mg/kg). Viral load in blood and intestines was measured using qRT-PCR, and intestinal tissue pathology was analyzed via H&E staining. Mechanistic studies included confocal microscopy to assess viral entry, pseudotyped particle (PEDV-pp, SARS-CoV-pp, SARS-CoV-2-pp) entry assays in Huh7 cells, and generation of Vero-eIF4E(S209A) mutant cells via CRISPR/Cas9 to evaluate the role of eIF4E phosphorylation. Cytoskeletal dynamics were examined by analyzing phosphorylation levels of cofilin, myosin light chain 2 (MLC2), and Erk.

Results:

RAF265 significantly reduced PEDV proliferation both in vitro and in vivo. In Vero cells, treatment with 10 μM RAF265 decreased viral yields by 4 orders of magnitude and suppressed PEDV-N protein expression. In piglets, RAF265 preserved intestinal mucosal integrity and reduced viral mRNA levels in blood and intestines. Mechanistically, RAF265 inhibited PEDV entry by modulating actin–myosin cytoskeletal arrangement, as evidenced by increased phosphorylation of cofilin, MLC2, and Erk. It also blocked entry of pseudotyped particles of PEDV, SARS-CoV, and SARS-CoV-2 with EC₅₀ values of 79.1 nM, 469.9 nM, and 335.2 nM, respectively. Furthermore, RAF265 suppressed viral protein synthesis by depressing phosphorylation of eIF4E (p-eIF4E), a key factor in cap-dependent translation. This effect was confirmed using Vero-eIF4E(S209A) cells, which showed reduced susceptibility to PEDV and diminished response to RAF265 compared to wild-type cells.

Data Summary:

RAF265 reduced PEDV viral titers by 10,000-fold (4 logs) in Vero cells at 10 μM. In piglets, viral mRNA levels in blood and intestines were significantly lowered upon RAF265 treatment. Pseudotyped virus entry assays yielded EC₅₀ values of 79.1 nM (PEDV-pp), 335.2 nM (SARS-CoV-2-pp), and 469.9 nM (SARS-CoV-pp), with no cytotoxicity observed below 10 μM in Huh7 cells. Phosphorylation of eIF4E, cofilin, MLC2, and Erk was dose-dependently modulated by RAF265 during early infection stages.

Conclusions:

RAF265 exhibits potent anti-PEDV activity through a dual mechanism: inhibition of viral entry via cytoskeletal rearrangement and suppression of viral protein synthesis by targeting host eIF4E phosphorylation. Its efficacy extends to other coronaviruses, including SARS-CoV and SARS-CoV-2, suggesting broad-spectrum antiviral potential. These findings support the repurposing of RAF265 as a host-directed antiviral strategy against coronavirus infections, warranting further preclinical and clinical investigation.

Practical Significance:

RAF265 represents a promising candidate for development as a broad-spectrum antiviral therapy against coronaviruses affecting both animals and humans, particularly in scenarios where vaccine efficacy is limited by viral evolution. Its ability to target host factors reduces the risk of viral resistance and may offer a rapid-response option during emerging coronavirus outbreaks.

📋 中文结构化总结 Chinese Structured Summary

中文

背景:

猪流行性腹泻病毒(PEDV)是一种有包膜的单股正链RNA病毒,属于冠状病毒科α冠状病毒属,可引起新生仔猪急性腹泻、呕吐、脱水及高死亡率,给养猪业造成重大经济损失。由于PEDV具有高度变异性,导致田间疫情呈现异质性,现有的防控措施——包括自体疫苗、商品疫苗及肠道内容物饲喂——效果欠佳。鉴于RNA病毒的高突变率及较低的耐药性产生可能性,靶向病毒复制所必需的宿主细胞机制是一种极具前景的策略,而目前尚无获批用于PEDV的特异性抗病毒药物,因此亟需开发有效的抗病毒疗法。

方法:

本研究评估了RAF265——一种最初作为抗癌药物开发的小分子激酶抑制剂——在体内外抗PEDV的疗效。体外实验中,用PEDV CV777毒株感染Vero细胞后,以不同浓度RAF265处理,通过TCID₅₀法测定病毒滴度,并通过Western blotting检测病毒蛋白表达。体内实验选取7日龄仔猪接种PEDV后,口服给予RAF265(25 mg/kg),采用qRT-PCR检测血液和肠道中的病毒载量,并通过H&E染色分析肠道组织病理学变化。机制研究包括:利用共聚焦显微镜评估病毒进入过程;在Huh7细胞中进行假型颗粒(PEDV-pp、SARS-CoV-pp、SARS-CoV-2-pp)进入实验;通过CRISPR/Cas9技术构建Vero-eIF4E(S209A)突变细胞系以评估eIF4E磷酸化的作用;通过分析cofilin、肌球蛋白轻链2(MLC2)和Erk的磷酸化水平检测细胞骨架动力学变化。

结果:

RAF265在体内外均显著抑制了PEDV的增殖。在Vero细胞中,10 μM RAF265处理使病毒滴度降低4个数量级,并抑制PEDV-N蛋白的表达。在仔猪中,RAF265保护了肠道黏膜的完整性,并降低了血液和肠道中病毒mRNA的水平。机制研究表明,RAF265通过调节肌动蛋白-肌球蛋白细胞骨架排列来抑制PEDV的进入,表现为cofilin、MLC2和Erk磷酸化水平升高。RAF265还阻断了PEDV、SARS-CoV和SARS-CoV-2假型颗粒的进入,其EC₅₀值分别为79.1 nM、469.9 nM和335.2 nM。此外,RAF265通过抑制eIF4E磷酸化(p-eIF4E)——帽依赖性翻译的关键因子——来抑制病毒蛋白合成。使用Vero-eIF4E(S209A)细胞证实了这一效应,该突变细胞对PEDV的易感性降低,且对RAF265的反应较野生型细胞减弱。

数据概要:

在Vero细胞中,10 μM RAF265使PEDV病毒滴度降低了10,000倍(4个对数级)。在仔猪中,RAF265处理后血液和肠道中的病毒mRNA水平显著降低。假型病毒进入实验的EC₅₀值分别为:PEDV-pp 79.1 nM、SARS-CoV-2-pp 335.2 nM、SARS-CoV-pp 469.9 nM,且在Huh7细胞中10 μM以下未见细胞毒性。在感染早期阶段,RAF265呈剂量依赖性调节eIF4E、cofilin、MLC2和Erk的磷酸化水平。

结论:

RAF265通过双重机制发挥强效抗PEDV活性:一是通过细胞骨架重排抑制病毒进入,二是通过靶向宿主eIF4E磷酸化抑制病毒蛋白合成。其对SARS-CoV和SARS-CoV-2等其他冠状病毒同样有效,提示其具有广谱抗病毒潜力。这些发现支持将RAF265重新定位为一种宿主导向的抗冠状病毒感染策略,值得进一步开展临床前和临床研究。

实际意义:

RAF265有望发展成为一种针对人和动物冠状病毒的广谱抗病毒治疗药物,尤其在病毒进化导致疫苗效力受限的情况下具有重要价值。由于其靶向宿主因子,可降低病毒产生耐药性的风险,并可能为新型冠状病毒疫情暴发提供快速应对方案。

📖 英文全文 English Full Text

EN

pmc Viruses Viruses 1559 viruses viruses Viruses 1999-4915 Multidisciplinary Digital Publishing Institute (MDPI) PMC9611448 PMC9611448.1 9611448 9611448 36298816 10.3390/v14102261 viruses-14-02261 1 Communication Small-Molecule RAF265 as an Antiviral Therapy Acts against PEDV Infection Wang Jing 1 † Tian Wen-Jun 1 † Li Cui-Cui 1 Zhang Xiu-Zhong 1 Fan Kai 1 * Li Song-Li 2 * https://orcid.org/0000-0001-9183-0023 Wang Xiao-Jia 1 * Takano Tomomi Academic Editor 1 Key Laboratory of Animal Epidemiology of the Ministry of Agriculture, College of Veterinary Medicine, China Agricultural University, Beijing 100193, China 2 Institute of Animal Sciences, Chinese Academy of Agricultural Sciences, Beijing 100193, China * Correspondence: fan@cau.edu.cn (K.F.); lisongli@caas.cn (S.-L.L.); wangxj@cau.edu.cn (X.-J.W.) † These authors contributed equally to this work. 15 10 2022 10 2022 14 10 420110 2261 24 9 2022 11 10 2022 15 10 2022 28 10 2022 24 05 2024 © 2022 by the authors. 2022 https://creativecommons.org/licenses/by/4.0/ Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/ ). Porcine epidemic diarrhea virus (PEDV), a member of the family Coronaviridae , causes acute diarrhea, vomiting, dehydration, and high mortality in newborn piglets, and has caused significant economic losses in the pig industry. There are currently no specific drugs available to treat PEDV. Viruses depend exclusively on the cellular machinery to ensure an efficient replication cycle. In the present study, we found that small-molecule RAF265, an anticancer drug that has been shown to be a potent inhibitor of RAF, reduced viral loads of PEDV by 4 orders of magnitude in Vero cells, and protected piglets from virus challenge. RAF265 reduced PEDV production by mediating cytoskeleton arrangement and targeting the host cell’s translation machinery. Treatment with RAF265 inhibited viral entry of PEDV S-glycoprotein pseudotyped viral vector particle (PEDV-pp), at half maximal effective concentrations (EC 50 ) of 79.1 nM. RAF265 also presented potent inhibitory activity against viral infection by SARS-CoV-2-pp and SARS-CoV-pp. The present work may provide a starting point for further progress toward the development of antiviral strategies effective against coronavirus PEDV. RAF265 PEDV cytoskeleton cellular translation antiviral National Natural Science Foundation of China 32172821 China Agricultural University CAU-G-PCIDA This research was funded by the [National Natural Science Foundation of China] grant number [32172821] and a CAU-Grant for the Prevention and Control of Immunosuppressive Disease in Animals (CAU-G-PCIDA) of the China Agricultural University. pmc-status-qastatus 0 pmc-status-live yes pmc-status-embargo no pmc-status-released yes pmc-prop-open-access yes pmc-prop-olf no pmc-prop-manuscript no pmc-prop-legally-suppressed no pmc-prop-has-pdf yes pmc-prop-has-supplement no pmc-prop-pdf-only no pmc-prop-suppress-copyright no pmc-prop-is-real-version no pmc-prop-is-scanned-article no pmc-prop-preprint no pmc-prop-in-epmc yes pmc-license-ref CC BY 1. Introduction Porcine epidemic diarrhea virus (PEDV) is an enveloped, single-stranded positive-sense RNA virus, which belongs to the genus Alphacoronavirus in the family Coronaviridae of the order Nidovirales . PEDV lacks its own translational apparatus and depends exclusively on its host’s translation machinery to efficiently synthesize viral proteins and product progeny virion. CoV mRNA generally undergoes cap-dependent translation with utilization of the eukaryotic translation initiation factor eIF4F complex [ 1 ]. Porcine epidemic diarrhea (PED) is caused by PEDV, with clinical symptoms including acute diarrhea, vomiting, dehydration, and a high mortality rate in newborn piglets [ 2 ]. The morbidity and mortality rates are almost 100% in suckling piglets [ 3 ]. Autogenous vaccines, commercialized vaccines, and intestinal content feeding do not efficiently control PED outbreaks, due to the hypervariability of PEDV, which makes field pandemics more heterogeneous [ 4 , 5 ]. There is an urgent need to develop effective antiviral therapies to compensate for the lack of vaccine immune protection. Due to the intrinsically high mutation rate of RNA viruses, targeting host cellular machineries, which are essential for viral infection, is expected to be an advantageous strategy for antiviral therapeutics [ 6 , 7 , 8 ]. The current antiviral strategies for controlling viral infectivity focus on identification of agents capable of intervening in the essential steps for viral infection, including viral entry and replication. Since many anticancer drugs have been established without toxicity in clinical trials, repurposing them for the use as antivirals may offer a more cost-effective and time-efficient approach to antiviral drug therapeutics [ 8 ]. RAF265 is a novel, orally active, small-molecule kinase inhibitor, and it is 14 times more selective for tumor cells than for non-tumor cells [ 9 , 10 , 11 ]. RAF265 is currently undergoing Phase 2 clinical trials for use in patients with locally advanced or metastatic melanoma without toxicity. In this study, we evaluated the efficacy of RAF265 as an antiviral agent. We found that RAF265 significantly reduced virus proliferation in vitro and in vivo. Mechanistically, the antiviral effect of RAF265 is a dual inhibitory strategy targeting cellular translational machinery and cytoskeletal arrangement. Our findings suggest that repurposing RAF265 as an antiviral may offer a potential strategy to treat coronavirus infection. 2. Materials and Methods 2.1. Cells, Virus, Antibodies and Inhibitors African green monkey kidney (Vero) cells were cultured in Dulbecco’s modified Eagle’s medium (DMEM, Gibco) supplemented with non-essential amino acids, 2 mM L-glutamine, sodium pyruvate, 10% heat-inactivated fetal bovine serum (FBS), 100 U/mL penicillin and 100 mg/mL streptomycin (all reagents were purchased from Gibco Invitrogen, Carlsbad, CA, USA) in a humidified 37 °C, 5% CO 2 incubator. Porcine epidemic diarrhea virus (PEDV) strain CV777 was reproduced in Vero cells [ 12 ]. PEDV titers were determined by a 50% tissue culture infective dose (TCID 50 ) assay in Vero cells [ 13 ]. Anti PEDV-N (1:1000) mouse monoclonal antibody was obtained from Alpha Diagnostic International (San Antonio, TX, USA). Antibodies to GAPDH (1:1000) and goat anti-mouse secondary antibodies conjugated to horseradish peroxidase (HRP, 1:10,000) were obtained from Beyotime Biotechnology (Shanghai, China). Rabbit polyclonal antibody to phosphorylated (p)-eIF4E (Ser 209, 1:1000) was purchased from Abcam (Cambridge, MA, USA). Rabbit polyclonal antibody to eIF4E (1:1000) was purchased from Proteintech (Wuhan, China). Antibodies to B-Raf, C-Raf, MNK1, p-Mnk1, p-S6K, p-4EBP1, EGFR, p-EGFR, p-FAK, Erk, p-Erk, Myosin, p-myosin, cofilin, p-cofilin and p-p38 (all antibodies diluted to 1:1000) were from Cell Signaling Technology (Danvers, MA, USA). The pharmacological inhibitors tested were from MedChemExpress (Monmouth Junction, NJ, USA). 2.2. Preparation of Cell Lysates and Western Blotting The cells were collected by centrifugation, washed three times with pre-cooled PBS and dissolved in 200 μL lysis buffer in the presence of the protease inhibitor cocktail, and finally disrupted by sonication. The cell suspension was then fractionated by centrifugation at 10,000 rpm for 10 min at 4 °C. Solubilized proteins were harvested, electrophoresed in denaturing polyacrylamide gels, electroblotted onto a polyvinylidene fluoride (PVDF) membrane, and incubated with appropriate primary antibodies overnight at 4 °C. Protein bands were detected with secondary antibody conjugated to horseradish peroxidase (HRP) for 45 min at room temperature, and GAPDH was used as a loading control. 2.3. Quantitative Real-Time PCR (qRT-PCR) Total RNA was extracted with Trizol (Invitrogen). The cDNA was obtained using cDNA Synthesis SuperMix (TRANS). A two-step RT-PCR (SYBR Green I technology, Applied Roche) was performed using SYBR green super mix (Toyobo) according to the manufacturer’s protocol to measure transcription levels for several genes of interest. The primers used were as follows: PEDV-N: 5′- CTG GGT TGC TAA AGA AGG CG −3′ (forward), 5′- CTG GGG AGC TGT TGA GAG AA −3′ (reverse). GAPDH: 5′-GAT CAT CAG CAA TGC CTC CT −3′(forward), 5′- TGA GTC CTT CCA CGA TAC CA −3′(reverse). Relative fold changes were calculated following the 2 −ΔΔCT method. GAPDH was used as a control. 2.4. Confocal Microscopy Analysis When Vero cells were infected with PEDV, RAF265 was added at the same time. After 1 h post-infection, the Vero cells were washed three times with pre-cooled PBS, and cells were fixed and incubated with primary antibody against PEDV-N overnight at 4 °C. Cells were washed and then incubated with TRITC-conjugated secondary antibodies. Nuclei were stained with DAPI. The cover slips were mounted on glass slides and cells were observed using a confocal laser scanning microscope. Experiments were conducted in duplicate in five independent wells. 2.5. Generation of Vero-eIF4E(S209A) Cells Single guide RNA (sgRNA) was designed to target the area near a specific site using the online CRISPR design tool “ http://crispr.mit.edu (accessed on 2 July 2018) ”, and a donor template was designed containing the mutation site. The sgRNA, donor template, and Cas9 plasmids were co-transfected into Vero cells and the cells were plated in 96-well plates by limit dilution to generate isogenic single clones. The clones were picked via screening by restriction endonuclease, and identified by Sanger sequencing. After screening, we obtained a total of 8 positive clones for extended culture. Mycoplasma test was performed with MycoAlert™ PLUS Mycoplasma Detection Kit of Lonza. Finally, the Ser was mutated to Ala at amino acid 209 of eIF4E. The sequence of the sgRNA was designed as follows: GCAGACACAGCTACTAAGAG (with 80.3% cleavage efficiency analyzed by on-line tool TIDE). 2.6. Production of Spike Pseudotyped Particles and Virus Entry Assay To produce PEDV-pp, HEK293T cells were seeded 1 day prior to transfection in 10-cm plates and then transfected using Lipofectamine 2000. The plasmid DNA transfection mixture (1 mL) was composed of 15 µg of pNL-4.3-Luc-E−R− and 15 µg of pcDNA-PEDV-Spike. A non-enveloped lentivirus particle (Bald virus) was also generated as negative control. 16 h after transfection, the media was replaced with fresh media supplemented with 2% FBS. Supernatants containing PEDV-pp were typically harvested at 36–48 h after transfection and then filtered through a syringe filter (0.22 µm) to remove any cell debris. PEDV-pp was freshly used or allocated and frozen at −80 °C. SARS-CoV-2-pp and SARS-CoV-pp were constructed following the same method. To conduct the virus entry assay, Huh7 cells were seeded in 96-well plate at 1 day prior to transduction. The next day, 100 µL of supernatant containing PEDV-pp, SARS-CoV-2-pp, or SARS-CoV-pp was added into each well in the absence or presence of serially diluted RAF265. After 48 h of transduction, the cells were lysed in 100 µL of passive lysis buffer and 50 µL lysate was incubated with 100 µL of luciferase assay substrate according to the manufacturer’s instructions (Promega, Madison, WI, USA). Anti-coronavirus experiments usually use two to four duplicated wells for each treatment. 2.7. Statistics All results were expressed as means and standard deviations (SD). Statistical analyses were performed using Prism 7.00 (GraphPad Software, La Jolla, CA, USA)). Significance was determined by one-way analysis of variance (ANOVA) with Dennett’s multiple-comparison test. Partial correlation analyses were evaluated using an unpaired Student’s t -test. 3. Results and Discussion 3.1. RAF265 Significantly Reduced Virus Proliferation In Vitro and In Vivo To analyze the specificity of RAF265 for viral replication of PEDV, we investigated its impact on the levels of viral protein and viral yield in the monkey-kidney-derived cell line Vero. We observed a significant reduction in viral protein levels (PEDV-N) under treatment with RAF265 at 5 μM ( Figure 1 A). Furthermore, we found that viral yields were reduced by 4 orders of magnitude when treated with RAF265 at a concentration of 10 μM ( Figure 1 A). Of note, Vero cells are widely used for PEDV pathogen research and vaccine development. We showed that when not treated with RAF265 they demonstrated high uptake of PEDV ( Figure 1 A). We also evaluated the inhibitory effect of RAF265 on PEDV infection in 7-day piglets. As shown in Figure 1 B, in piglets infected with PEDV, the epithelial cells of the mucosa were necrotic, the cytoplasm was vacuolated, the cytolysis disappeared, and the intestinal glands in the lamina propria were loosely arranged. After 2 doses of RAF265 at 25 mg/kg, the structure of mucosa, submucosa, muscularis and tunica adventitia were seen to be intact, and no obvious denatured necrosis in the tissue was observed in infected piglets. RAF265 also decreased viral mRNA level of PEDV in the blood and intestines ( Figure 1 C). It has been reported that PEDV-loaded RBCs can transfer the virus to CD3+ T cells, leading to intestinal infection via cell-to-cell contact [ 14 ], and also causes typical diarrhea symptom [ 15 ]. These results indicate that RAF265 reduces virus proliferation of PEDV in vitro and in vivo. 3.2. RAF265-Mediated Actin–Myosin Arrangement Interfered with PEDV Entry We investigated which stages of PEDV infection were affected by RAF265. Laser confocal ( Figure 2 A) and qRT-PCR ( Figure 2 B) experiments showed that RAF265 interfered with PEDV entry into Vero cells. Especially, the absorption rate of virus particles at 4 °C for 1 h was measured in the absence or presence of different concentrations of RAF265. The result showed that RAF265 increased viral absorption ( Figure 2 B, top). Subsequently, we investigated viral endocytosis stage, and found that the expression levels of PEDV v-RNA were significantly reduced under treatment with RAF265 (middle, bottom). The significant reduction in the level of viral RNA in the cell indicates that RAF265 blocks the entry of PEDV into the Vero cell by targeting viral internalization. Increasing evidence suggests that the choice of coronavirus entry mechanism is very complex. Coronavirus was initially thought to enter cells through direct fusion with the plasma membrane, but more recent evidence suggests that virus is able to enter cells through a receptor-mediated, clathrin- and caveola-independent endocytic pathway [ 16 , 17 , 18 ]. After PEDV reached the entry site, actin filaments of PEDV-infected cells retracted and concentrated around plasma membrane. Then, actin bundles aligned with plasma membrane for virus internalization [ 19 ]. At approximately 30–60 min post-infection, bound virus surfed toward the foot of filopodia via actin retrograde flow, while actin filament depolymerization occurred and transient blebs were formed on the cell surface [ 20 ]. Given that dynamic actin rearrangement is involved in viral absorption and endocytosis of coronavirus [ 21 , 22 ]. We sought to evaluate the effect of RAF265 on the actin cytoskeleton. In our study, the phosphorylation levels of cofilin (p-CFL), myosin light chain 2 (p-MLC2), and extracellular regulated protein kinase (p-Erk) were increased at 1 h under treatment with RAF265 in a dose-dependent manner ( Figure 2 C). Erk activation is required for PEDV replication [ 23 ]. Raf kinase inhibitors inhibit Erk phosphorylation in tumor cells but promote Erk phosphorylation in non-tumor cells [ 24 ]. It suggests that RAF265 presents antiviral activity during the early stage of PEDV infection by modulating p-cofilin; this event may be catalyzed by Erk activation. As reported, MLC2 plays an important role in the process by which virus surfs along filopodia on the host membrane [ 25 ] to the entry sites; the activation of MLC2 (p-MLC2) facilitates viral invasion [ 21 ]. Likewise, MLC2 may initiate the internalization of coronavirus by disintegrating F-actin to overcome the actin barrier [ 21 , 26 ]. Our findings suggest that RAF265 may mediate actin–myosin II network to interfere with the invasion of PEDV. The details need to be further investigated. Different viruses exploit different aspects to co-opt Cdc42/Rac1-PAK signaling, to influence the behavior of infected cells, such as cytoskeletal rearrangements, antiapoptotic, and immune evasion [ 27 ]. We found that RAF265 inhibited the entry of PEDV into the cell, while Cdc42 inhibitor of ZCL278 [ 28 ] and ML141 [ 29 ] did not ( Figure 2 D). The present finding suggests that PEDV manipulates the cytoskeleton for virus entry in a Cdc42-independent manner, although PEDV [ 30 ] and another porcine coronavirus PHEV [ 20 ] rely on clathrin-mediated endocytosis for entry into cells, and PHEV utilizes Cdc42 to promote its own invasion [ 27 , 31 ]. Given these findings, the ability of RAF265 to regulate cytoskeletal arrangement should be further explored in antiviral drug development. 3.3. RAF265 Blocked Viral Entry of Coronavirus PEDV, SARS-CoV, and SARS-CoV-2 To evaluate the ability of RAF265 treatment to inhibit viral entry by specifically blocking endocytosis, a recombinant PEDV S-glycoprotein pseudotyped viral vector particle (PEDV-pp), SARS-CoV-2-pp, and SARS-CoV-pp, an infectivity assay in Huh7 hepatocarcinoma cell line was performed. Note that pseudotyped particles are commonly used to study mechanisms of viral entry [ 32 ]. As shown in Figure 3 , RAF265 presented potent inhibitory activity against viral infection by PEDV-pp, SARS-CoV-2-pp, and SARS-CoV-pp, at half maximal effective concentrations (EC 50 ) of 79.1, 335.2, 469.9 nM, respectively. No measurable decrease in cell viability was detected below 10 μM in Huh7 cells ( Figure 3 ). The potency of RAF265 highlights its potential utility as an effective entry inhibitor against SARS-CoV-2 and other zoonotic coronaviruses. 3.4. RAF265 Reduced the Synthesis of Viral Proteins of PEDV by Depressing p-eIF4E Because RAF265 is a B-Raf kinase inhibitor, we explored whether the inhibitory effect of RAF265 on viral infections is related to the phosphorylation eIF4E (p-eIF4E), which is a downstream factor involved in the Ras/Raf/MAPK-regulated kinase signaling pathway. Vero-eIF4E (S209A) cell lines in which the phosphorylation-required residue serine 209 was substituted with alanine were established (eIF4E cannot be phosphorylated). The growth rate of the Vero-eIF4E (S209A) and the wild type Vero-WT cells was nearly consistent within 4 days after monolayer adherent culture. We observed that the S209A-Vero cells appear to be less susceptible than WT-Vero to viral infection ( Figure 4 A). Furthermore, upon viral infection by PEDV, the inhibitory effect of RAF265 on viral replication was more effective in the WT-Vero than in the S209A-Vero cells ( Figure 4 B). These results indicate that RAF265 effectively reduces the synthesis of viral proteins of PEDV by targeting p-eIF4E. Viruses have been found to target the processes of eIF4E phosphorylation to facilitate selective translation for viral mRNAs during infection [ 33 , 34 ]. For example, the stimulation of eIF4E phosphorylation enhances viral translation and replication of Newcastle disease virus [ 34 ] and Herpes simplex virus 1 [ 35 ]. As the phosphorylation of eIF4E on serine 209 is required for proliferation of cancer but not normal cells [ 36 ]; inhibitors targeting p-eIF4E have therefore been considered for anticancer and antiviral therapeutics, in the hope that they would not produce excessive side effects. Here, we showed that small-molecule RAF265 depressed the level of p-eIF4E to exhibit antiviral activity against PEDV infections with relatively low likelihood of drug resistance. Taken together, our findings suggest that RAF265 efficiently inhibits viral infection in vitro and in vivo, and mediates cytoskeleton arrangement and targets the host cell’s translation machinery (see schematic diagram in Figure 4 C). Furthermore, RAF265-mediated cytoskeleton arrangement prevented the endocytosis of the coronaviruses PEDV, SARS-CoV and SARS-CoV-2. Altogether, our findings suggest that RAF265 may offer a starting point for the development of antivirals to treat coronavirus infection, and should be further investigated in clinical trials. Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Author Contributions Conceptualization, X.-J.W., C.-C.L. and J.W.; methodology, X.-J.W., C.-C.L., J.W., X.-Z.Z., K.F. and S.-L.L.; investigation, C.-C.L., J.W., W.-J.T., X.-Z.Z. and K.F.; funding acquisition, X.-J.W.; supervision, X.-J.W.; writing—original draft, J.W. and X.-J.W.; writing—review and editing, X.-J.W. All authors have read and agreed to the published version of the manuscript. Institutional Review Board Statement All animal research projects were sanctioned by the Beijing Laboratory Animal Welfare and Ethics Committee and were approved by the Animal Ethics Committee of China Agricultural University (approval number 201206078) and were performed in accordance with Regulations of Experimental Animals of Beijing Authority. Animal were housed with pathogen-free food and water under 12-h light-cycle conditions. To reduce the stress to other animals, euthanasia was carried out in a soundproof room to avoid panic of the living animals. 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Mnk earmarks eIF4E for cancer therapy Proc. Natl. Acad. Sci. USA 2010 107 13975 13976 10.1073/pnas.1008908107 20679238 PMC2922518 Figure 1 Inhibitory effect of RAF265 on PEDV infection in vitro and in vivo. ( A ) Vero cells were infected with PEDV at 0.1 MOI in the presence of the RAF265 at different concentrations for 24 h, viral yield was measured by TCID 50 assay (left) and level of viral protein PEDV-N was analyzed by WB (right). ( B , C ) Six piglets were divided into two groups of three. One group was intraperitoneally infected with PEDV at 10 5 TCID 50 , and another group was injected with PEDV in the presence of two doses of RAF265 (25 mg/kg) orally at an interval of 1 day. 7 days after infection, the piglets were killed and the Jejunum middle of intestine was harvested and fixed in 4% paraformaldehyde and embedded in paraffin, and then tissue sections were stained with hematoxylin and eosin (H&E) ( B ). Arrows indicate the epithelial cells of the mucosa were necrotic, the cytoplasm was vacuolated, the cytolysis disappeared, and the intestinal glands in the lamina propria were loosely arranged. Blood and intestine were harvested and total RNA was extracted using Trizol reagent, and then PEDV-NP mRNA was detected by qRT-PCR ( C ). h.p.i, hours post-infection; MOI, multiplicity of infection. Significance was evaluated using the t test (mean ± SEM, n = 3). *** p ≤ 0.001. Figure 2 RAF265-mediated cytoskeleton arrangement involved in the early events of viral infection. ( A ) Infected cells were treated with RAF265 for 1 h at 37 °C, fixed, permeabilized, and stained for DAPI (blue) and PEDV NP (red). Viral entry was evaluated by confocal fluorescence microscopy magnification 200×. The experiments were performed three times and from 1 random horizon in each experiment. ( B ) Vero cells were infected with PEDV in the presence of DMSO or RAF265 for 1 h at 4 °C, washed three times with cold PBS, and then viral RNA was extracted for RT-PCR assay (top). Vero cells were infected with PEDV in the presence of DMSO or RAF265 for 1 h at 37 °C, washed three times with cold PBS. Viral RNA was extracted for RT-PCR assay (middle). Vero cells were infected with PEDV for 1 h at 4 °C, washed three times with cold PBS, and then treated with indicated concentrations of RAF265 for 1 h at 37 °C. Viral RNA was extracted for RT-PCR assay (bottom). ( C ) Vero cells were infected with PEDV at 0.1 MOI in the presence of RAF265 at different concentrations for 1 h. Cells were harvested for WB analysis with indicated antibodies. ( D ) Infected cells were co-treated with RAF265, ZCL278, or ML141 for 1 h at 37 °C and washed with cold PBS. Viral genome was extracted for qRT-PCR. h.p.i, hours post-infection; MOI, multiplicity of infection. Significance was evaluated using one-way ANOVA (mean ± SEM, n = 3). ** p ≤ 0.01; *** p ≤ 0.001. Figure 3 RAF265 targeted the entry of PEDV, SARS-CoV, and SARS-CoV-2. Huh7 cells were transduced with PEDV-pp, SARS-CoV-pp, or SARS-CoV-2-pp in the presence of serially diluted RAF265 or DMSO. Forty-eight hours after transduction, the cells were lysed and incubated with luciferase assay substrate. The cytotoxicity of RAF265 was evaluated by MTT assay. Data were analyzed with GraphPad Prism 7 (GraphPad Software, San Diego, CA, USA). For entry assay, the infectivity data were first inverted to antivirus activity. Each data set was normalized by the background control (no virus) to define the real value for 100%. The values shown in the graphs are presented as mean ± SEM. Figure 4 RAF265 suppressed the synthesis of viral proteins of PEDV. ( A ) Vero-WT and Vero-eIF4E (S209A) cells were challenged with PEDV for different times; cells lysates were harvested for WB analysis with indicated antibodies. ( B ) Vero-WT and Vero-eIF4E (S209A) cells were infected with PEDV in the presence of increasing doses of RAF265 for 24 h. Two cell lines were harvested for WB analysis with indicated antibodies. ( C ) Schematic representation of dual-targeting inhibitor RAF265 as active antiviral. After binding, PEDV enters into Vero cells by endocytosis, RAF265 mediates arrangement of actin cytoskeleton involved in the internalization of viral infection of PEDV. RAF265 also decreases the level of p-eIF4E to inhibit the synthesis of viral proteins. h.p.i, hours post-infection; MOI, multiplicity of infection.

📖 中文全文 Chinese Full Text

中文

# 翻译

**RAF265作为一种抗病毒小分子药物抗PEDV感染的作用研究**

王晶1 †,田文军1 †,李翠翠1,张秀忠1,范凯1 *,李松丽2 *,王晓佳1 *

1 中国农业大学动物医学院,农业部动物流行病学重点实验室,北京 100193 2 中国农业科学院北京畜牧兽医研究所,北京 100193

* 通讯作者:fan@cau.edu.cn (K.F.);lisongli@caas.cn (S.-L.L.);wangxj@cau.edu.cn (X.-J.W.) † 这些作者对本研究做出了同等贡献。

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## 摘要

猪流行性腹泻病毒(Porcine epidemic diarrhea virus, PEDV)是冠状病毒科(Coronaviridae)成员,可引起新生仔猪急性腹泻、呕吐、脱水及高死亡率,给养猪业造成了重大经济损失。目前尚无特异性药物治疗PEDV。病毒完全依赖细胞机制来确保高效的复制周期。在本研究中,我们发现小分子RAF265——一种已被证明为RAF强效抑制剂的抗癌药物——在Vero细胞中将PEDV病毒载量降低了4个数量级,并保护仔猪免受病毒攻击。RAF265通过介导细胞骨架排列和靶向宿主细胞的翻译机器来减少PEDV的产生。RAF265处理在79.1 nM的半数最大有效浓度(EC50)下抑制了PEDV S糖蛋白假型病毒载体颗粒(PEDV-pp)的病毒进入。RAF265对SARS-CoV-2-pp和SARS-CoV-pp的病毒感染也表现出强效抑制活性。本研究可能为开发针对冠状病毒PEDV的有效抗病毒策略提供一个起点。

**关键词:** RAF265;PEDV;细胞骨架;细胞翻译;抗病毒

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## 1. 引言

猪流行性腹泻病毒(PEDV)是一种有包膜的单股正链RNA病毒,属于尼多病毒目(Nidovirales)冠状病毒科(Coronaviridae)α冠状病毒属(Alphacoronavirus)。PEDV缺乏自身的翻译装置,完全依赖宿主的翻译机器来高效合成病毒蛋白并产生子代病毒颗粒。冠状病毒mRNA通常利用真核翻译起始因子eIF4F复合物进行帽依赖性翻译[1]。

猪流行性腹泻(PED)由PEDV引起,临床症状包括急性腹泻、呕吐、脱水及新生仔猪高死亡率[2]。哺乳仔猪的发病率和死亡率接近100%[3]。由于PEDV的高变异性使得田间流行毒株更加异质性,自体疫苗、商品化疫苗及肠道内容物饲喂均不能有效控制PED的暴发[4,5]。迫切需要开发有效的抗病毒疗法来弥补疫苗免疫保护的不足。

由于RNA病毒固有的高突变率,靶向病毒感染所必需的宿主细胞机制被认为是抗病毒治疗的一种优势策略[6,7,8]。目前控制病毒感染性的抗病毒策略侧重于鉴定能够干预病毒感染关键步骤(包括病毒进入和复制)的药物。由于许多抗癌药物已在临床试验中证实无毒性,将其重新用于抗病毒药物可能为抗病毒药物开发提供一种更具成本效益和时间效率的方法[8]。

RAF265是一种新型口服活性小分子激酶抑制剂,其对肿瘤细胞的选择性是非肿瘤细胞的14倍[9,10,11]。RAF265目前正在针对局部晚期或转移性黑色素瘤患者进行2期临床试验,且未显示毒性。在本研究中,我们评估了RAF265作为抗病毒药物的效力。我们发现RAF265在体外和体内均显著降低了病毒增殖。从机制上讲,RAF265的抗病毒作用是一种双重抑制策略,同时靶向细胞翻译机器和细胞骨架排列。我们的研究结果表明,将RAF265重新用作抗病毒药物可能为治疗冠状病毒感染提供一种潜在策略。

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## 2. 材料与方法

### 2.1. 细胞、病毒、抗体和抑制剂

非洲绿猴肾(Vero)细胞在Dulbecco改良Eagle培养基(DMEM,Gibco)中培养,培养基补充有非必需氨基酸、2 mM L-谷氨酰胺、丙酮酸钠、10%热灭活胎牛血清(FBS)、100 U/mL青霉素和100 mg/mL链霉素(所有试剂均购自Gibco Invitrogen,Carlsbad, CA, USA),置于37°C、5% CO2的湿润培养箱中。猪流行性腹泻病毒(PEDV)CV777株在Vero细胞中增殖[12]。PEDV滴度通过Vero细胞中的50%组织培养感染剂量(TCID50)测定法确定[13]。抗PEDV-N小鼠单克隆抗体(1:1000)购自Alpha Diagnostic International(San Antonio, TX, USA)。GAPDH抗体(1:1000)和辣根过氧化物酶(HRP)标记的羊抗鼠二抗(1:10,000)购自碧云天生物技术公司(上海,中国)。磷酸化(p)-eIF4E(Ser209,1:1000)兔多克隆抗体购自Abcam(Cambridge, MA, USA)。eIF4E兔多克隆抗体(1:1000)购自Proteintech(武汉,中国)。B-Raf、C-Raf、MNK1、p-Mnk1、p-S6K、p-4EBP1、EGFR、p-EGFR、p-FAK、Erk、p-Erk、Myosin、p-myosin、cofilin、p-cofilin和p-p38抗体(所有抗体均稀释至1:1000)购自Cell Signaling Technology(Danvers, MA, USA)。所测试的药理学抑制剂购自MedChemExpress(Monmouth Junction, NJ, USA)。

### 2.2. 细胞裂解物制备和蛋白质印迹

通过离心收集细胞,用预冷的PBS洗涤三次,在蛋白酶抑制剂混合物存在下溶解于200 μL裂解液中,最后通过超声破碎。然后将细胞悬液在4°C下以10,000 rpm离心10分钟进行分级分离。收获可溶性蛋白质,在变性聚丙烯酰胺凝胶中进行电泳,电转至聚偏二氟乙烯(PVDF)膜上,并在4°C下与适当的一抗孵育过夜。在室温下用辣根过氧化物酶(HRP)标记的二抗检测蛋白条带45分钟,以GAPDH作为内参。

### 2.3. 实时荧光定量PCR(qRT-PCR)

使用Trizol(Invitrogen)提取总RNA。使用cDNA Synthesis SuperMix(TRANS)获得cDNA。按照制造商的方案,使用SYBR green super mix(Toyobo)进行两步RT-PCR(SYBR Green I技术,Applied Roche),以测量几个目的基因的转录水平。所用引物如下:PEDV-N:5′-CTGGGTTGCTAAAGAAGGCG-3′(正向),5′-CTGGGGAGCTGTTGAGAGAA-3′(反向)。GAPDH:5′-GATCATCAGCAATGCCTCCT-3′(正向),5′-TGAGTCCTTCCACGATACCA-3′(反向)。按照2-ΔΔCT方法计算相对倍数变化。以GAPDH作为对照。

### 2.4. 共聚焦显微镜分析

当Vero细胞感染PEDV时,同时加入RAF265。感染后1小时,用预冷的PBS洗涤Vero细胞三次,将细胞固定并与抗PEDV-N一抗在4°C下孵育过夜。洗涤细胞,然后与TRITC标记的二抗孵育。细胞核用DAPI染色。将盖玻片封在载玻片上,使用共聚焦激光扫描显微镜观察细胞。实验在五个独立孔中一式两份进行。

### 2.5. Vero-eIF4E(S209A)细胞的构建

使用在线CRISPR设计工具"http://crispr.mit.edu(2018年7月2日访问)"设计靶向特定位点附近区域的单导RNA(sgRNA),并设计含有突变位点的供体模板。将sgRNA、供体模板和Cas9质粒共转染至Vero细胞,通过有限稀释法将细胞接种于96孔板中以产生同基因单克隆。通过限制性内切酶筛选挑取克隆,并通过Sanger测序进行鉴定。筛选后,我们共获得8个阳性克隆进行支原体检测使用Lonza的MycoAlert™ PLUS支原体检测试剂盒。最终,eIF4E第209位氨基酸的丝氨酸(Ser)突变为丙氨酸(Ala)。sgRNA序列设计如下:GCAGACACAGCTACTAAGAG(通过在线工具TIDE分析切割效率为80.3%)。

### 2.6. 刺突蛋白假型颗粒的制备和病毒进入测定

为制备PEDV-pp,将HEK293T细胞在转染前一天接种于10 cm培养板中,然后使用Lipofectamine 2000进行转染。质粒DNA转染混合物(1 mL)由15 µg pNL-4.3-Luc-E−R−和15 µg pcDNA-PEDV-Spike组成。同时产生无包膜慢病毒颗粒(Bald virus)作为阴性对照。转染后16小时,将培养基更换为补充有2% FBS的新鲜培养基。通常在转染后36-48小时收集含有PEDV-pp的上清液,然后通过注射器过滤器(0.22 µm)过滤以去除任何细胞碎片。PEDV-pp现用现配或分装后于-80°C冷冻保存。SARS-CoV-2-pp和SARS-CoV-pp按相同方法构建。

为进行病毒进入测定,在转导前一天将Huh7细胞接种于96孔板中。第二天,在不存在或存在系列稀释RAF265的情况下,将100 µL含有PEDV-pp、SARS-CoV-2-pp或SARS-CoV-pp的上清液加入各孔中。转导48小时后,将细胞在100 µL被动裂解缓冲液中裂解,将50 µL裂解液与100 µL荧光素酶测定底物按照制造商说明(Promega, Madison, WI, USA)进行孵育。抗冠状病毒实验通常每个处理使用两至四个重复孔。

### 2.7. 统计学分析

所有结果以平均值和标准差(SD)表示。使用Prism 7.00(GraphPad Software, La Jolla, CA, USA)进行统计分析。显著性通过单因素方差分析(ANOVA)结合Dunnett多重比较检验确定。部分相关性分析使用非配对Student's t检验进行评估。

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## 3. 结果与讨论

### 3.1. RAF265在体外和体内显著降低病毒增殖

为分析RAF265对PEDV病毒复制特异性的影响,我们研究了其在猴肾来源的Vero细胞系中对病毒蛋白水平和病毒产量的影响。我们观察到在5 μM RAF265处理下,病毒蛋白(PEDV-N)水平显著降低(图1A)。此外,我们发现当用10 μM RAF265处理时,病毒产量降低了4个数量级(图1A)。值得注意的是,Vero细胞广泛用于PEDV病原学研究和疫苗开发。我们显示,在未用RAF265处理时,Vero细胞对PEDV表现出高摄取率(图1A)。

我们还评估了RAF265对7日龄仔猪PEDV感染的抑制作用。如图1B所示,在感染PEDV的仔猪中,黏膜上皮细胞坏死,胞质空泡化,细胞溶解消失,固有层中的肠腺排列松散。在25 mg/kg剂量下给予2剂RAF265后,感染仔猪的黏膜、黏膜下层、肌层和外膜结构完整,组织中未观察到明显的变性坏死。RAF265还降低了血液和肠道中PEDV的病毒mRNA水平(图1C)。

据报道,负载PEDV的红细胞可将病毒转移至CD3+ T细胞,通过细胞-细胞接触导致肠道感染[14],并引起典型的腹泻症状[15]。这些结果表明RAF265在体外和体内均降低了PEDV的病毒增殖。

### 3.2. RAF265介导的肌动蛋白-肌球蛋白排列干扰PEDV进入

我们研究了RAF265影响PEDV感染的哪些阶段。激光共聚焦(图2A)和qRT-PCR(图2B)实验表明,RAF265干扰了PEDV进入Vero细胞。特别地,在4°C下1小时测量了在不同浓度RAF265存在或不存在时病毒颗粒的吸附率。结果显示RAF265增加了病毒吸附(图2B,上图)。随后,我们研究了病毒内吞阶段,发现在RAF265处理下PEDV v-RNA的表达水平显著降低(中图、下图)。细胞中病毒RNA水平的显著降低表明RAF265通过靶向病毒内化来阻断PEDV进入Vero细胞。

越来越多的证据表明,冠状病毒进入机制的选择非常复杂。冠状病毒最初被认为通过直接与质膜融合进入细胞,但更多近期证据表明,病毒能够通过受体介导的、不依赖于网格蛋白和小窝的内吞途径进入细胞[16,17,18]。PEDV到达进入位点后,PEDV感染细胞的肌动蛋白丝回缩并在质膜周围聚集。然后,肌动蛋白束与质膜排列以进行病毒内化[19]。在感染后约30-60分钟,结合的病毒通过肌动蛋白逆行流动向丝状伪足基部移动,同时发生肌动蛋白丝去聚合并细胞表面形成瞬时泡状突起[20]。

鉴于动态肌动蛋白重排参与冠状病毒的病毒吸附和内吞[21,22],我们试图评估RAF265对肌动蛋白细胞骨架的影响。在我们的研究中,在RAF265处理1小时后,cofilin(p-CFL)、肌球蛋白轻链2(p-MLC2)和细胞外调节蛋白激酶(p-Erk)的磷酸化水平以剂量依赖性方式增加(图2C)。Erk激活是PEDV复制所必需的[23]。Raf激酶抑制剂在肿瘤细胞中抑制Erk磷酸化,但在非肿瘤细胞中促进Erk磷酸化[24]。这表明RAF265在PEDV感染早期通过调节p-cofilin发挥抗病毒活性;这一事件可能由Erk激活催化。

据报道,MLC2在病毒沿宿主膜上的丝状伪足移动至进入位点的过程中发挥重要作用[25];MLC2的激活(p-MLC2)促进病毒入侵[21]。同样,MLC2可能通过解聚F-肌动蛋白以克服肌动蛋白屏障来启动冠状病毒的内化[21,26]。我们的研究结果表明,RAF265可能介导肌动蛋白-肌球蛋白II网络以干扰PEDV的入侵。具体细节有待进一步研究。

不同病毒利用不同方面来利用Cdc42/Rac1-PAK信号,以影响感染细胞的行为,如细胞骨架重排、抗凋亡和免疫逃逸[27]。我们发现RAF265抑制了PEDV进入细胞,而Cdc42抑制剂ZCL278[28]和ML141[29]则没有(图2D)。目前的发现表明,PEDV以不依赖于Cdc42的方式操纵细胞骨架进行病毒进入,尽管PEDV[30]和另一种猪冠状病毒PHEV[20]依赖网格蛋白介导的内吞作用进入细胞,且PHEV利用Cdc42促进自身入侵[27,31]。鉴于这些发现,RAF265调节细胞骨架排列的能力应在抗病毒药物开发中进一步探索。

### 3.3. RAF265阻断冠状病毒PEDV、SARS-CoV和SARS-CoV-2的病毒进入

为评估RAF265处理通过特异性阻断内吞作用抑制病毒进入的能力,在Huh7肝癌细胞系中对重组PEDV S糖蛋白假型病毒载体颗粒(PEDV-pp)、SARS-CoV-2-pp和SARS-CoV-pp进行了感染性测定。值得注意的是,假型颗粒通常用于研究病毒进入机制[32]。如图3所示,RAF265对PEDV-pp、SARS-CoV-2-pp和SARS-CoV-pp的病毒感染表现出强效抑制活性,半数最大有效浓度(EC50)分别为79.1、335.2和469.9 nM。在Huh7细胞中低于10 μM未检测到细胞活力的可测量下降(图3)。RAF265的效力凸显了其作为针对SARS-CoV-2和其他人畜共患冠状病毒的有效进入抑制剂的潜在用途。

### 3.4. RAF265通过降低p-eIF4E减少PEDV病毒蛋白的合成

由于RAF265是一种B-Raf激酶抑制剂,我们探索了RAF265对病毒感染的抑制作用是否与eIF4E的磷酸化(p-eIF4E)有关,p-eIF4E是Ras/Raf/MAPK调节激酶信号通路中的下游因子。建立了Vero-eIF4E(S209A)细胞系,其中磷酸化所需的第209位丝氨酸残基被丙氨酸取代(eIF4E不能被磷酸化)。Vero-eIF4E(S209A)和野生型Vero-WT细胞在单层贴壁培养4天内的生长速率基本一致。我们观察到S209A-Vero细胞似乎比WT-Vero对病毒感染更易感性更低(图4A)。此外,在PEDV感染时,RAF265对病毒复制的抑制作用在WT-Vero中比在S209A-Vero细胞中更有效(图4B)。这些结果表明RAF265通过靶向p-eIF4E有效降低了PEDV病毒蛋白的合成。

研究发现病毒靶向eIF4E磷酸化过程以促进感染期间病毒mRNA的选择性翻译[33,34]。例如,eIF4E磷酸化的刺激增强了新城疫病毒[34]和单纯疱疹病毒1型[35]的病毒翻译和复制。由于eIF4E第209位丝氨酸的磷酸化是癌细胞而非正常细胞增殖所必需的[36];因此靶向p-eIF4E的抑制剂被认为可用于抗癌和抗病毒治疗,希望它们不会产生过度的副作用。在此,我们表明小分子RAF265通过降低p-eIF4E水平来发挥抗PEDV感染的抗病毒活性,且产生耐药性的可能性相对较低。

综上所述,我们的研究结果表明RAF265在体外和体内均有效抑制病毒感染,并介导细胞骨架排列和靶向宿主细胞的翻译机器(见示意图4C)。此外,RAF265介导的细胞骨架排列阻止了冠状病毒PEDV、SARS-CoV和SARS-CoV-2的内吞作用。总之,我们的研究结果表明RAF265可能为开发治疗冠状病毒感染的抗病毒药物提供一个起点,并应在临床试验中进一步研究。

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**作者贡献:** 概念化,X.-J.W.、C.-C.L.和J.W.;方法学,X.-J.W.、C.-C.L.、J.W.、X.-Z.Z.、K.F.和S.-L.L.;调查,C.-C.L.、J.W.、W.-J.T.、X.-Z.Z.和K.F.;资金获取,X.-J.W.;监督,X.-J.W.;写作——原稿,J.W.和X.-J.W.;写作——审阅和编辑,X.-J.W.。所有作者均已阅读并同意手稿的发表版本。

**机构审查委员会声明:** 所有动物研究项目均经北京实验动物福利与伦理委员会批准,并由中国农业大学动物伦理委员会批准(批准号201206078),并按照北京市当局实验动物法规执行。动物在无病原体食物和水的条件下饲养,采用12小时光照周期。为减少对其他动物的压力,安乐死在隔音室中进行,以避免活体动物的恐慌。

**数据可用性声明:** 支持本研究结果的数据可根据要求从通讯作者处获取。

**利益冲突:** 作者声明无利益冲突。