Cardiomyocytes: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters Using Novel Video-Based Movement Analysis Software

✅ 全文

心肌细胞:利用新型基于视频的运动分析软件分析解离簇之间的温度响应与信号传播

作者 Dhanesh Kattipparambil Rajan; Antti-Juhana Mäki; Mari Pekkanen-Mattila; Joose Kreutzer; Tomi Ryynänen; Hannu Välimäki; Jarmo Verho; Jussi T. Koivumäki; Heimo Ihalainen; Katriina Aalto‐Setälä; Pasi Kallio; Jukka Lekkala 期刊 IEEE Access 发表日期 2020 ISSN 2169-3536 DOI 10.1109/access.2020.3001191 类型 原创研究 (Original Research)

📄 英文摘要 English Abstract

EN

Human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) provide a great resource for functional cell and tissue models that can be applied in heart research, pharmaceutical industry, and future regenerative medicine. During cell model experiments, precise control of environmental parameters is important. Temperature is a fundamental parameter, and the acute effect of temperature on hiPSC-CM functions has previously been studied. This paper reports on long-term, systematic temperature response studies of hiPSC-CM cultures. The studies were conducted outside an incubator in a modular cell culturing system along with a temperature sensor plate (TSP) and a new beating analysis software (CMaN -cardiomyocyte function analysis tool). Temperature sensing at the actual cell location is challenging with bulky external sensors; however, a TSP with resistive microsensors provides an effortless solution. Experimental results showed that temperature nonlinearly affects the hiPSC-CM beating frequency with a Q 10 temperature coefficient of ~2.2. Both the active (contraction) and passive (relaxation) movements were influenced by temperature, and changes in the relaxation times were larger than the contraction times. However, the contraction amplitudes exhibited a greater spread of variation. We also present novel results on the visualization of hiPSC-CM contractile networking and non-invasive image-based measurement of signal propagation between dissociated CM clusters. Compared with previously reported tools, CMaN is an advanced and easy-to-use robust software. It is faster, more sensitive, computationally less expensive, and extracts six different signals of the contractile motion per process, providing at least one useful beating signal even in complex cases. The software also supports movement center detection and independent computation of the relaxation and contraction parameters.

📄 中文摘要 Chinese Abstract

中文
人诱导多能干细胞来源的心肌细胞(hiPSC-CMs)因其人源性和无限可获取性,是心脏研究、药物测试和再生医学的重要资源。然而,实验过程中环境参数——尤其是温度——必须严格控制,因为温度偏差可能引起细胞应激、改变收缩力并影响实验可重复性。虽然急性温度效应对hiPSC-CMs的影响已有研究,但系统性的长期温度响应分析及解离簇间信号传播的定量研究尚存空白。本研究采用集成新型温度传感器板(TSP)的模块化细胞培养系统和先进的视频分析软件(CMaN),填补了这一空白。

📋 英文结构化总结 English Structured Summary

全文整理

EN

Background:

Human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) are a vital resource for cardiac research, drug testing, and regenerative medicine due to their human origin and unlimited availability. However, environmental parameters—especially temperature—must be tightly controlled during experiments, as deviations can induce cellular stress, alter contractility, and affect experimental reproducibility. While acute temperature effects on hiPSC-CMs have been studied, systematic long-term analyses of temperature response and signal propagation between dissociated clusters were lacking. This study addresses these gaps using a modular cell culture system integrated with a novel temperature sensor plate (TSP) and advanced video-based analysis software (CMaN).

Methods:

The study employed a portable modular cell culture system combined with a microfabricated temperature sensor plate (TSP) featuring resistive microsensors for precise, localized temperature measurement at the cell level. hiPSC-CMs were cultured directly on the TSP inside a mini-incubator with controlled gas environment (5% CO₂, 19% O₂, 76% N₂). Temperature was programmatically varied from 37°C to 25°C and back in 3°C steps, with 30-minute stabilization periods before video recording. Beating dynamics were recorded via inverted microscopy and analyzed using CMaN—a novel MATLAB-based software that computes affine optical flow to extract six distinct contractile motion signals per video. CMaN enables non-invasive, automated analysis of beating frequency, contraction/relaxation times, amplitude, movement center detection, and cluster identification. Its performance was benchmarked against MUSCLEMOTION and SarcTrack.

Results:

Temperature significantly and nonlinearly affected hiPSC-CM function. Beating frequency decreased with cooling, following a nonlinear (polynomial or exponential) relationship rather than a linear one, with Q₁₀ temperature coefficients ≈2.2, indicating strong thermal sensitivity. Contraction and relaxation times increased at lower temperatures, with relaxation times showing greater prolongation (115% increase at 25°C vs. 37°C) compared to contraction times (80% increase). Contraction amplitude also declined with temperature but exhibited high beat-to-beat variability. Long-term cultures showed a progressive decline in beating frequency even at constant 37°C (68–85% reduction over 70–100 hours), likely due to medium exhaustion. Additionally, contractile synchronization between physically separated hiPSC-CM clusters was visualized and quantified, revealing action potential (AP) propagation delays corresponding to velocities of 1.98–3.88 mm/s at 28–37°C.

Data Summary:

Across 12 clusters from five cultures, the mean beating frequency dropped from ~60–100 BPM at 37°C to ~20–40 BPM at 25°C. Nonlinear models (R² > 0.99) fit the frequency–temperature data significantly better than linear models (p < 0.05). At 25.0 ± 0.1°C, mean relaxation time was 0.58 ± 0.12 s and contraction time was 0.35 ± 0.08 s; at 37.1 ± 0.1°C, these decreased to 0.27 ± 0.06 s and 0.19 ± 0.05 s, respectively (p < 0.01). AP propagation velocity between clusters ranged from 1.98 mm/s at 28°C to 3.88 mm/s at 37°C. CMaN demonstrated superior sensitivity and speed: it processed a 30-s video in <10 s (vs. >60 s for alternatives) and detected movements in videos downsampled to 1/256 size, where other tools failed.

Conclusions:

This work presents the first systematic, automated analysis of long-term temperature effects on hiPSC-CMs using integrated hardware and software. Key findings include the nonlinear dependence of beating frequency on temperature, significant prolongation of relaxation and contraction times at lower temperatures, and the ability to non-invasively measure inter-cluster signal propagation. The CMaN software offers a robust, sensitive, and efficient tool for extracting multiple contractile parameters from video data, outperforming existing methods. These results underscore the critical importance of precise temperature control in hiPSC-CM experiments to avoid artifacts and ensure data reliability.

Practical Significance:

The integrated system—combining the TSP, modular culture platform, and CMaN software—provides a powerful, non-invasive platform for high-throughput, real-time assessment of cardiomyocyte function under controlled thermal conditions. It is directly applicable to drug toxicity screening, disease modeling, and organ-on-chip assays where environmental stability and functional readouts are essential. The ability to monitor signal propagation between clusters opens new avenues for studying cardiac network dynamics and arrhythmia mechanisms in vitro. CMaN’s open availability enhances accessibility for the research community, supporting standardized, reproducible analysis of hiPSC-CM contractility.

📋 中文结构化总结 Chinese Structured Summary

中文

背景:

人诱导多能干细胞来源的心肌细胞(hiPSC-CMs)因其人源性和无限可获取性,是心脏研究、药物测试和再生医学的重要资源。然而,实验过程中环境参数——尤其是温度——必须严格控制,因为温度偏差可能引起细胞应激、改变收缩力并影响实验可重复性。虽然急性温度效应对hiPSC-CMs的影响已有研究,但系统性的长期温度响应分析及解离簇间信号传播的定量研究尚存空白。本研究采用集成新型温度传感器板(TSP)的模块化细胞培养系统和先进的视频分析软件(CMaN),填补了这一空白。

方法:

本研究采用便携式模块化细胞培养系统,结合集成电阻式微传感器的微加工温度传感器板(TSP),实现细胞水平的精确局部温度测量。hiPSC-CMs在TSP上直接培养,置于控制气体环境(5% CO₂、19% O₂、76% N₂)的微型培养箱中。温度以3°C为步长从37°C程序化降至25°C再回升,每次变化后稳定30分钟再进行视频记录。通过倒置显微镜记录搏动动态,并使用CMaN进行分析——这是一款基于MATLAB的新型软件,通过计算仿射光流提取每段视频的六种不同收缩运动信号。CMaN支持非侵入式自动化分析,包括搏动频率、收缩/舒张时间、振幅、运动中心检测和簇识别。其性能与MUSCLEMOTION和SarcTrack进行了基准比较。

结果:

温度对hiPSC-CM功能产生显著且非线性的影响。搏动频率随降温而降低,遵循非线性(多项式或指数)关系而非线性关系,Q₁₀温度系数约为2.2,表明强烈的热敏感性。低温下收缩和舒张时间均延长,其中舒张时间的延长幅度(25°C时较37°C增加115%)大于收缩时间(增加80%)。收缩振幅也随温度降低而下降,但表现出较高的搏动间变异性。长期培养中,即使在恒定37°C下,搏动频率也呈进行性下降(70–100小时内降低68–85%),可能由培养基耗竭所致。此外,对物理分离的hiPSC-CM簇间收缩同步性进行了可视化和定量分析,揭示了动作电位(AP)传播延迟,对应速度在28–37°C下为1.98–3.88 mm/s。

数据摘要:

在来自五个培养的12个簇中,平均搏动频率从37°C时的约60–100 BPM降至25°C时的约20–40 BPM。非线性模型(R² > 0.99)对频率-温度数据的拟合显著优于线性模型(p < 0.05)。在25.0 ± 0.1°C时,平均舒张时间为0.58 ± 0.12 s,收缩时间为0.35 ± 0.08 s;在37.1 ± 0.1°C时,分别降至0.27 ± 0.06 s和0.19 ± 0.05 s(p < 0.01)。簇间AP传播速度在28°C时为1.98 mm/s,在37°C时为3.88 mm/s。CMaN展现出优越的灵敏度和速度:处理一段30秒视频仅需不到10秒(对比其他工具超过60秒),并在下采样至1/256大小的视频中仍能检测运动,而其他工具在此条件下失效。

结论:

本研究首次利用集成硬件和软件对hiPSC-CM的长期温度效应进行了系统性自动化分析。主要发现包括搏动频率对温度的非线性依赖关系、低温下收缩和舒张时间的显著延长,以及非侵入式测量簇间信号传播的能力。CMaN软件为从视频数据中提取多种收缩参数提供了稳健、灵敏且高效的工具,性能优于现有方法。这些结果强调了在hiPSC-CM实验中精确温度控制对于避免伪影和确保数据可靠性的关键重要性。

实际意义:

该集成系统——结合TSP、模块化培养平台和CMaN软件——为在受控温度条件下高通量、实时评估心肌细胞功能提供了强大的非侵入式平台。它直接适用于药物毒性筛选、疾病建模和器官芯片检测等需要环境稳定性和功能读出的应用场景。监测簇间信号传播的能力为体外研究心脏网络动力学和心律失常机制开辟了新途径。CMaN的开放获取性增强了研究界的可及性,支持hiPSC-CM收缩性的标准化和可重复分析。

📖 英文全文 English Full Text

EN

Received May 2, 2020, accepted May 15, 2020, date of publication June 9, 2020, date of current version June 23, 2020. Digital Object Identifier 10.1109/ACCESS.2020.3001191

Cardiomyocytes: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters Using Novel Video-Based Movement Analysis Software DHANESH KATTIPPARAMBIL RAJAN 1 , (Member, IEEE), ANTTI-JUHANA MÄKI 1 , MARI PEKKANEN-MATTILA 2 , (Member, IEEE), JOOSE KREUTZER 1 , TOMI RYYNÄNEN 1 , HANNU VÄLIMÄKI 1 , JARMO VERHO 1 , JUSSI T. KOIVUMÄKI 2,3 , HEIMO IHALAINEN 1 , KATRIINA AALTO-SETÄLÄ 2,3,4,5 , PASI KALLIO 1 , AND JUKKA LEKKALA 1 1 Micro- and Nanosystems Research Group, Faculty of Medicine and Health Technology, Tampere University, 33720 Tampere, Finland 2 Heart Group, Faculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland 3 Computational Biophysics and Imaging Group, Faculty of Medicine and Health Technology, Tampere University, 33520 Tampere, Finland 4 Heart Hospital, Tampere University Hospital, 33520 Tampere, Finland 5 Clinical Medicine, Faculty of Medicine and Health Science, Tampere University, 33520 Tampere, Finland

Corresponding author: Dhanesh Kattipparambil Rajan (dhanesh.kr@tuni.fi) This work was supported by the Business Finland [former Finnish Funding Agency for Technology and Innovation (TEKES)] through the Human Spare Parts 2 Project.

ABSTRACT Human-induced pluripotent stem cell-derived cardiomyocytes (hiPSC-CMs) provide a great resource for functional cell and tissue models that can be applied in heart research, pharmaceutical industry, and future regenerative medicine. During cell model experiments, precise control of environmental parameters is important. Temperature is a fundamental parameter, and the acute effect of temperature on hiPSC-CM functions has previously been studied. This paper reports on long-term, systematic temperature response studies of hiPSC-CM cultures. The studies were conducted outside an incubator in a modular cell culturing system along with a temperature sensor plate (TSP) and a new beating analysis software (CMaN -cardiomyocyte function analysis tool). Temperature sensing at the actual cell location is challenging with bulky external sensors; however, a TSP with resistive microsensors provides an effortless solution. Experimental results showed that temperature nonlinearly affects the hiPSC-CM beating frequency with a Q10 temperature coefficient of ∼2.2. Both the active (contraction) and passive (relaxation) movements were influenced by temperature, and changes in the relaxation times were larger than the contraction times. However, the contraction amplitudes exhibited a greater spread of variation. We also present novel results on the visualization of hiPSC-CM contractile networking and non-invasive image-based measurement of signal propagation between dissociated CM clusters. Compared with previously reported tools, CMaN is an advanced and easy-to-use robust software. It is faster, more sensitive, computationally less expensive, and extracts six different signals of the contractile motion per process, providing at least one useful beating signal even in complex cases. The software also supports movement center detection and independent computation of the relaxation and contraction parameters. INDEX TERMS Cardiomyocytes beating analysis software, movement center detection, cardiomyocytes temperature response, nonlinear temperature dependency, signal propagation between clusters. I. INTRODUCTION

The limited availability of primary human cardiomyocytes (CMs) poses challenges for basic and translational research. The associate editor coordinating the review of this manuscript and approving it for publication was Eduardo Rosa-Molinar

VOLUME 8, 2020 .

However, human-induced pluripotent stem cells (hiPSC) can be differentiated into cardiomyocytes (hiPSC-CMs), providing an unlimited source of human CMs from healthy individuals and from patients with genetic cardiac diseases. hiPSC-CMs are a promising tool that can be used to study the development of the heart and CMs, cardiac disease

This work is licensed under a Creative Commons Attribution 4.0 License. For more information, see https://creativecommons.org/licenses/by/4.0/ 109275

D. Kattipparambi Rajan et al.: CMs: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters

modelling, and future regenerative medicine applications [1], [2]. Additionally, owing to their human origins, they overcome the limitations of animal models for drug screening and toxicology [3]. In hiPSC-CM experimental models, levels of O2 , CO2 , pH, and osmolarity are crucial to maintaining the functionalities of CMs. Temperature is another vital parameter, and it must be carefully regulated to maintain normal cardiac activity without hyper/hypothermia [4], [5]. In hibernation experiments, hypothermia has been shown to cause metabolic injuries and damage to mammalian hearts [6]. Additionally, functional and cellular injuries and field potential alterations have been reported in cultured CMs during hypothermia [7], [8]. Generally, both hypo- and hyperthermia induce stress in cells, which can generate various stress reactions [9]. Typical stress reactions involve the expression of cold or heat shock proteins, which can adversely affect vital cell functions [10]–[12]. Hypothermia/ rewarming (H/R) cycles are known to reduce myofilament Ca2+ sensitivity and affect cardiac action potentials (AP) and contractility [13], [14]. They have also been shown to affect the sarcomere length and cardiac muscle force generation in animal models [14]–[16]. Generally, H/R is poorly tolerated by the myocardium, but a complete picture of the underlying mechanism of H/R-induced abnormalities is still elusive [14]. In the laboratory, cells often experience temperature shock when moved outside incubators or sometimes inside incubators. This can affect the cell attachment [17], pH [18], and evaporation rate, all of which can generate undesired stimulations and experimental variations [18]–[21]. In extreme cases, temperature shocks can trigger oxidative damage [10] and initiate cell death [22]. Therefore, it is important that the temperature-related stress responses of hiPSC-CMs are recognized and carefully evaluated. The temperature responses can be studied in different ways, e.g., using standard electrophysiological methods, traction/atomic force microscopy, or video microscopy [23]. A decline in beating frequency has often been observed when CMs are collected from an incubator or studied at low temperatures [23]. However, precise temperature sensing from the cell area is typically challenging when using bulky external sensors [24], and the temperatures reported in many prior studies may correspond only approximately to the real temperatures experienced by CMs. This is because of difficulties in attaching temperature sensors closely to cells. Furthermore, to our knowledge, systematic, automated H/R temperature stressing and concurrent hiPSC-CM mechanobiological measurements have not been reported thus far. Few recent reports have described the excitation– contraction coupling during H/R and temperature-dependent beating synchronization [14], [25]. However, these studies were not conducted using hiPSC-CMs but with animal CMs. Herein, a long-term automated hiPSC-CM mechanobiological response to temperature was evaluated using a previously reported apparatus [26] and two new add-ons: 1) a temperature sensor plate (TSP) patterned with micro-temperature sensors and 2) novel video-based mechanobiology analysis 109276

software (CMaN - cardiomyocyte function analysis tool). By including the TSP, traditional bulky thermometers were avoided; instead, CMs were directly cultured on the TSP. This enabled accurate temperature sensing from the exact cell area. According to our experimental data analysis, the temperature dependence on hiPSC-CM beating frequency is nonlinear, which has not been previously reported. We also computed the Q10 temperature coefficients [27] of hiPSCCMs. Moreover, we observed the contractile networking and beating synchronization of dissociated clusters and measured the propagation of the action potential (AP) signal between them. This is the first paper that reports these events in hiPSCCM cultures and their non-invasive measurements by image processing. The new software, CMaN, is an easy-to-use tool and available as Supplementary Material 1. Compared with conventional function analysis methods, such as Ca2+ transients, electrophysiology, sarcomere length profiling, or AFM approaches [25], [28]–[31], CMaN is a non-invasive and robust tool. The properties of several similar tools have been compared elsewhere [23], and CMaN was tested against three of them [32]–[34]. CMaN is faster, more sensitive, computationally less expensive, and allows ROI (region of interest) selection. It can process videos from single cells or large clusters individually or batchwise, and compared to previous methods [32]–[38], CMaN extracts six separate signals of the contractile motion per processing. The separate signals are especially advantageous when analyzing videos that have complex features, such as weak movements, overexposure, and gamma variations owing to uneven backgrounds. Additionally, the signals from CMaN represent the contractile phenomena more exactly with both positive (upstroke) and negative (downstroke) segments, allowing the computation of not only the beating frequency but also the contraction and relaxation features separately. Furthermore, optional features to detect the movement area (cluster location) and movement center (region of the largest contractile motion) were also integrated.

The portable cell culture system [26] and in-house microfabricated temperature sensor plate [24] are shown in FIGURE 1. The temperature sensor plate contains independently calibrated resistive micro-temperature sensors that are patterned with copper on a glass plate, which senses temperature from the exact cell area (FIGURE 1c-e). The culture temperature is regulated with a programmable transparent indium tin oxide (ITO) heater [24]. Of the two microscopy options [26], inverted microscopy was utilized for recording the beating videos (camera: FL3-U3-13E4C-C, PointGrayFLIR Systems). The culture was illuminated only during the video recordings. The hiPSC-CMs were cultured in a mini incubator (FIGURE 1b,c) made of a polydimethylsiloxane (PDMS) cell culture chamber [35] that was sealed with a VOLUME 8, 2020

D. Kattipparambi Rajan et al.: CMs: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters

FIGURE 1. Apparatus for the hiPSC-CM temperature response experiments. (a) Portable modular cell culture system [26]. (b) Mini incubator. (c) Temperature sensor plate (TSP). The mini incubator is fixed on the TSP, and the ITO heater stays underneath. (d, e) A beating hiPSC-CM cluster on one of the resistive temperature sensors on the TSP. Beating signals were analyzed non-invasively from the recorded cell videos using CMaN software. TABLE 1. CMaN performance comparison against MUSCLEMOTION and SarcTrack using two computers (System 1: 2.6-GHz processor and 32 GB of RAM, System 2: 2.7-GHz processor and 8 GB of RAM). † 30-s long avi (60 fps, 640 × 512 pixels, 32-bit RGB, 1.64-GB size on an SSD hard drive). †2 20 avi files (33-GB size on an external SSD drive).

transparent polycarbonate lid and polypropylene outer cover [39], [40]. A gas mixture (5 % CO2 , 19 % O2 , and 76 % N2 ) supplied around the PDMS chamber created a stable gas environment [21]. The data flow and all the automated operations were controlled using a custom user interface that was scripted using MATLAB R2016B (MathWorks, Inc., Natick, MA, USA). B. CELL CULTURING

The hiPSC-CMs were differentiated [41] by co-culturing iPS cells with END-2 cells [42] from the healthy control in-house iPS cell line (UTA.04602.WT). The beating hiPSCCM clusters were mechanically excised from the differentiation cultures 20–30 days after initiation of differentiation and plated on the TSP. Before plating, TSPs were first sterilized with 70% ethanol and dried thoroughly before the mini incubator was attached to the plate. Plates were hydrophilized with fetal bovine serum (FBS, Lonza) and coated with 0.1% gelatin type A (Sigma-Aldrich). For each plate, 3–4 VOLUME 8, 2020

beating hiPSC-CM clusters were plated. After plating, the hiPSC-CM clusters were cultured in a conventional incubator overnight in KnockOut Dulbecco’s Modified Eagle Medium (KO-DMEM, Lonza) with 20% FBS, 1% nonessential amino acids (NEAA, Cambrex), 2 mM Glutamax (Invitrogen), and 50 U/mL penicillin/streptomycin (Lonza) before transferring them onto the modular system. For all prolonged cell culturing, the exhausted culture medium was replaced with fresh medium twice a week. C. ANALYSIS SOFTWARE

Herein, CMaN was scripted (in MATLAB), evaluated, and utilized. It is available as Supplementary Material 1 with this article. In CMaN, the movement analysis is based on a novel approach for the computation of the affine optic flow, which is an improved version of the classical Lucas–Kanade optical flow method that estimates the velocity of objects in consecutive images [43]. In the affine optic flow, the flow field is parameterized [44], [45] by a six-dimensional vector 109277

D. Kattipparambi Rajan et al.: CMs: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters

FIGURE 2. Advanced video-based movement analysis software, CMaN (Cardiomyocyte function analysis tool). (a) Screenshot from the software user interface. In the upper left corner, the blue rectangle shows the movement center of a single-cell CM, whereas the green rectangle shows the user-selected ROI. (b) Table of the estimated mechanobiology parameters. (c) A schematic overview of the algorithm flow and the principle behind the *AFOF (affine optical flow) computation from image pairs. (d) Six signal components of the contractile motion extracted from a single cell beating video.

D. Kattipparambi Rajan et al.: CMs: Analysis of Temperature Response and Signal Propagation Between Dissociated Clusters

to describe the x and y translation velocities (Vx, Vy ), dilation, i.e., the rate of expansion/shrinking (d), the rate of rotation around the z axis (r), and the shear rates along the x axis (s1) and the main diagonal (s2). These six parameters are estimated by computing the least squares on the spatial and temporal gray-level gradients in consecutive video frames [43], [44]. FIGURE 2a shows a screenshot of CMaN. The six signal components analyzed from an example single cell are shown in FIGURE 2c,d. Several mechanobiological [32], [37], [46] parameters, namely, the beating frequency, relaxation time, contraction time, amplitude of beating, and beat-to-beat interval, can be estimated using one or more of the six signals. FIGURE 2b shows a table of these parameters analyzed from a single cell. Beating of both single cells and large clusters can be analyzed independently or batchwise. TABLE 1 summarizes the performance of CMaN compared with MUSCLEMOTION (v1-1beta.ijm) and SarcTrack (v 2019). See [47], and FIGURE 4 shows a comparison of their measurement sensitivities. CMaN has already been applied elsewhere [48] for CM tracking in conductive hyaluronic acid hydrogels. Additionally, example drug response plots of beat rate increasing and decreasing drugs that was analyzed with CMaN is provided in Supplementary Material 4 [49], [50]. D. MOVEMENT CENTER DETECTION AND CLUSTER FINDING

One novel feature of CMaN is movement center detection, which identifies the location of the most energetic movement area by detecting the region of the highest affine flow signal amplitude. This feature is illustrated in FIGURE 3a–b. The computation starts with a short portion of the beating signal containing at least one contraction–relaxation segment. Each image (either full frame or ROI) in the selected portion is first spatially sampled into M-by-N tiles (FIGURE 3b, where M and N are even). Then, the affine flow is sequentially computed in all the tiles, and the tile with the highest signal amplitude (movement center) is identified. In FIGURE 3a, the blue dashed rectangle shows the movement center identified over the user-selected ROI (green rectangle). An example of beating signals from the ROI and those separate from the identified movement center and the neighborhood are shown in Supplementary Material 5. One advantage of the movement center detection is that once the movement center is known, the best beating signal can be extracted by analyzing the area around the center. The CMaN software also provides tools for finding CM clusters by identifying the locations of the highest textures (high-frequency regions), which is illustrated in FIGURE 3c. The cells in the CM cluster generate high-frequency textures (FIGURE 3c, left). First, the image is gamma corrected, smoothed, and low pass filtered, which results in bright cluster boards against a black background (FIGURE 3c, middle). This is followed by image convolution using a large-area template on the entire frame (full frame/ROI). Thus, multiple clusters can be distinguished from the surroundings. VOLUME 8, 2020

TABLE 2. Summary of temperature response experiments.

In FIGURE 3c, right, blue rectangles show three identified clusters. This feature provides a way to automate both cluster detection and beating analysis. E. EXPERIMENTAL PROTOCOLS

The culturing temperature was programmatically adjusted from 37◦ C to 25◦ C and back to 37◦ C in 3◦ C steps, and beating videos were recorded. Overall, twelve CM clusters were studied in five separate cell cultures; see TABLE 2 for the experimental summary. The temperature was logged every 60 s, and videos were logged every 2 h. When a new temperature was set, the culture was allowed to stabilize for 30 min before video logging. The results are provided in the Automated temperature stressing section. Contractile synchronization measurements were performed using cultures containing dissociated clusters, and the results from a six cluster case are provided in the Contractile synchronization of dissociated hiPSC-CM clusters section. Furthermore, plots of the temporal reduction in beating frequency for the cases of two long-term cultures are provided in the Temporal changes in beating at a constant temperature section. The Q10 temperature coefficients were calculated using an exponential model, (BF1 / BF2 )∗ exp(10 / [T1 − T2 ]), where BF1 and BF2 are the beating frequencies at temperatures T1 and T2 [27]. Statistical analysis: Pairwise comparisons of the mean parameter values at different temperatures were performed using a one-sided parametric t-test, and p < 0.05 was regarded as statistically significant. III. RESULTS A. AUTOMATED TEMPERATURE STRESSING

The beating signals (Vy ) analyzed from a representative cluster (C12, RNo-2) at three selected temperatures (37◦ C, 31◦ C, and 25◦ C) as an overlay on the corresponding beating videos are shown in FIGURE 5. Additionally, the figure displays the calculated values for the beating frequency (BF), contraction time (CT), relaxation time (RT), and relaxed time (RxT, the time between relaxation and contraction). 109279

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FIGURE 3. Movement center detection and cluster finding. (a, b) The signal portion of a contractionrelaxation region of a single cell selected for movement center analysis. The frames from this portion were spatially split into M-by-N tiles for sequential affine flow processing. The detected movement center is marked with a blue dashed rectangle. (c) Three images (first frame, smoothed, and with identified clusters) from the cluster-finding feature. The blue rectangles show the identified clusters in the entire frame. See also Supplementary Material 5.

FIGURE 4. CMaN analysis sensitivity. Column 1: Screenshots of five videos. The original video (1st one) was spatially downsized 1/8, 1/64, 1/128, and 1/256 times to produce subsequent videos with a reduced movement area. Columns 2 & 3: Normalized signals (referenced to original signal, ROI: full frame, which also includes the black area in the downsized videos) analyzed with CMaN and MUSCLEMOTION. CMaN displayed better sensitivity.

The results show that lowering the temperature decreases BF and increases RT and RxT, whereas CT remains 109280

relatively constant. The full video is provided in Supplementary Material 2. FIGURE 6a–e show the temperatureinduced changes in the beating frequency (BF), contraction time (CT), relaxation time (RT), and amplitude of contraction for two representative clusters (C9, C10, RNo-1:4). The data are from four consecutive stressing cycles over approximately 60 h. The results show that hiPSC-CM contractility responds strongly to temperature changes: the beating frequency (FIGURE 6b) changes proportionally to temperature and declines over time (see also FIGURE 7b, C9 and C10, ∼100 h). For a single representative stressing cycle (FIGURE 7a, C12, RNo-1), the linear temperature coefficient was approximately 5 BPM/◦ C (the coefficient of determination, R2 = 0.97). Remarkably, nonlinear functions provide better fits, e.g., a 2nd degree polynomial and a mono-exponential function yielded R2 = 0.9999 and R2 = 0.9996, respectively. FIGURE 7c shows the beating frequency (C9, C10) combined with their nonlinear fits for 60 h of culture. The Q10 temperature coefficients (see plots) were larger than 2, implying a strong temperature dependence. Additionally, the R2 of the nonlinear fits (FIGURE 7d) are typically larger than those of linear (poly1) fits. Furthermore, the nonlinear temperature dependence was confirmed in the case of all 12 clusters, and its significance was statistically verified with the t-test on the R2 values. The nonlinear R2 > linear R2 for 0–15 h (means of 93% VOLUME 8, 2020

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FIGURE 5. Effect of temperature on hiPSC-CM function. We show the analyzed beating signals (C12, RNo-1) at three selected temperatures as an overlay on the corresponding videos. See Supplementary Material 2 for the full video. Calculated values are shown for the beating frequency (BF), contraction time (CT), relaxation time (RT), and relaxed time (RxT, the time between relaxation and contraction).

and 90%, p < 0.05) and 0–30 h (means of 91% and 88%, p < 0.05). However, for durations > 30 h, several clusters showed a reduction in spontaneous contractility by factors other than temperature; hence, the statistical analysis can become complex. Similarly, the contraction and relaxation times also vary but inversely (see FIGURE 6c, d) with temperature; thus, their magnitudes are larger at lower temperatures. Additionally, the relaxation times were larger than the contraction times. In TABLE 3, the relaxation and contraction times at low (T = 25.0 ± 0.1◦ C) and high (T = 37.1 ± 0.1◦ C) temperatures are provided. They show that a 12◦ C decline in temperature causes an 80% increase in contraction time and a 115% increase in relaxation time. Similarly, the contraction amplitude (FIGURE 6e), calculated as the geometric mean of amplitudes of Vx and Vy signals, also showed a strong temperature dependence similar to the beating frequency. However, the beat-to-beat amplitude variation in the 60-s videos, especially at low temperatures, was large. Additionally, the beating frequency from four stress cycles for all twelve clusters (from five different cell cultures) is shown in FIGURE 8. The range of the beating frequency VOLUME 8, 2020

FIGURE 6. Temperature response plots of the two representative hiPSC-CM clusters (C9 and C10). Experimental data from approximately 60 h of mechanobiological measurements of (a) cell area temperature, (b) beating frequency, (c) contraction time, (d) relaxation time, and (e) amplitude of contraction. The temperature was precisely measured using the temperature-sensitive plate, and the plotted parameters were non-invasively analyzed using the video-based beating analysis software, CMaN.

varied from culture to culture; for statistical comparison, frequencies were scaled between 1 and 0 using a normalization function (BF − min(BF)) / (max(BF) − min(BF)), where BF is the beating frequency. Despite the normalization, the error bars show relatively large variations, which presumably resulted from the biological variability between the individual clusters. 109281

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FIGURE 7. The hiPSC-CM beating frequency in long-term temperature stressing experiments. The data are from automated temperature cycles of decreasing (37◦ C to 25◦ C) and increasing (25◦ C to 37◦ C) temperatures in 3◦ C steps. (a) C12 data from a representative single stressing cycle (RNo-1) with linear and nonlinear (polynomial 2 and mono-exponential) fits. Compared to the linear fit, the nonlinear functions showed nearly perfect (R2 ≈ 1) fits. (b) Beating frequencies of two clusters (C9 and C10, RNo-1:4) over approximately 60 h of experiment. (c) Data (shown in upper right figure) rearranged into different time segments with 2nd degree polynomial and mono-exponential fits. The computed Q10 temperature coefficients are shown in each figure, showing a strong temperature dependence on the hiPSC-CM function. However, the coefficient of determination decreased significantly in extended cultures.

TABLE 3. Mean relaxation and contraction times for all clusters (C1-C12) at the two temperatures. Results are presented in terms of means and standard deviations. Statistical analysis was performed according to a t-test (one-tailed). Statistical significances are denoted as ∗ p < 0.05 and ∗∗ p < 0.01.

B. CONTRACTILE SYNCHRONIZATION OF DISSOCIATED hiPSC-CM CLUSTERS

We also quantified the electrical activation (AP propagation) between dissociated clusters by measuring the time delay between their beatings. FIGURE 10a shows six beating clusters (C3 to C8), and their movement centers are marked with blue rectangles. Their beating signals are shown in 109282

FIGURE 10c, where the AP propagation time delay between contractions is clear. The signal propagation was also made visually detectable in the original video by image processing; an example video is provided in Supplementary Material 3. FIGURE 10b shows selected frames from this video. The dynamic sequence of cluster networking started at the cluster 3 (FIGURE 10b(i)) and passed through other clusters up until cluster 6 (FIGURE 10b(vi)). Each frame was produced as the absolute difference in intensity between the actual frame and the first frame. As a result, a brighter passing halo became visible to describe the AP propagation delay. In FIGURE 10d, this time delay is plotted as a function of the cluster distance (cluster X – cluster C3, where X is C8 or C7 or C6 or C5 or C4 or C3), and the corresponding AP propagation velocities (slope) were calculated to be v = 3.88, 2.76, 2.34, and 1.98 mm/s at T = 37, 34, 31, and 28◦ C, respectively. VOLUME 8, 2020

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FIGURE 8. Beating frequency of twelve spontaneously beating hiPSC-CM clusters during four stress cycles. The clusters are from five different cell cultures in which the range of beating frequency varied from culture to culture. Thus, the error bars also account for the biological variability.

FIGURE 9. Temporal reduction of beating frequency at 37◦ C in two separate cultures. A 68-85% decline in beating frequency was observed over 70-100 h. C. TEMPORAL CHANGES IN BEATING AT A CONSTANT TEMPERATURE

Additionally, the contractility slowly decreased over extended time periods even at a constant temperature. The beating frequency plots from two long-term measurements at a constant 37◦ C with 2 clusters (C11, C9) are shown in FIGURE 9. The measured slope (dBF / dt [BPM/h]) values are −0.22 and −0.74, respectively, indicating a 68%–85% decline in beating frequency over 70–100 h. The decline rate likely depends on many factors, including cell density, secretory/metabolic conditions, and medium aging (exhaustion of accessory food factors). IV. DISCUSSION

Herein, we demonstrated the applicability of a previously reported modular cell culturing system [26] with two new add-ons: 1) temperature sensor plates [24] and 2) novel videobased mechanobiology analysis software, CMaN, to study the temperature response of hiPSC-CMs. Experiments were conducted outside a conventional incubator, and to our VOLUME 8, 2020

knowledge, this is the first report describing a systematic automated temperature stress test and concurrent hiPSCCM function analysis. Results showed that the hiPSC-CM contractile function is strongly temperature dependent and that typically the temperature coefficient is Q10 > 2. Additionally, the beating frequency–temperature relationship was described by nonlinear (2nd order polynomial and mono-exponential) functions. In the statistical analysis, the R2 values were always higher for nonlinear models than for linear ones, and some clusters showed nearly perfect (R2 ∼1) nonlinear fits. Thus, maintaining a stable temperature during hiPSC-CMs experiments is crucial to minimize undesired stimulation of cells and avoid experimental errors. Moreover, during continuous measurements, the contractility of the hiPSC-CMs decreased with time even at fixed temperatures, which is also an important factor to consider for experimental designs. The medium aging, evaporation, and related changes in the medium composition as well as the exhaustion of essential nutrients likely contribute to the slowing of the contractile kinetics temporally [19]. The combined beating frequency plot (FIGURE 8) shows data from twelve beating clusters from five different cell cultures; thus, the error bars also account for the biological variability. Because hiPSCCMs are known to exhibit a high phenotype variability, the variability of the temperature dependency between different myocytes/culture preparations must also be considered. In contrast to the beating frequency, the contraction and relaxation times inversely vary with temperature. The relaxation times are typically longer than the contraction times. The contraction amplitude, however, displayed more beat-tobeat variability (standard deviation) in almost all recorded videos. Interestingly, some clusters occasionally ceased the beating function but regained the function slowly and exhibited a temperature dependence during continued stress cycles. Biologically, the temperature dependence of hiPSC-CMs can be multifactorial. A more general explanation is the prolongation of APs at lower temperatures due to slower kinetics of underlying ion channels, exchangers, and intracellular pumps [51]. The hiPSC-CMs, which are similar to their native human counterparts, have most of the basic underlying excitation–contraction coupling components, including membrane voltage regulation and signaling cascades [52]–[54]. However, reduced inward rectifier K+ (potassium) currents and presence of prominent pacemaker currents collectively produce AP waveforms that make hiPSC-CMs significantly different and facilitate spontaneous automaticity not observed in mature human ventricular myocytes [53]. Temperature dependence of AP prolongation has been previously studied in animal models [55], [56]. Guinea pig ventricular myocytes have shown 115% prolongation of AP with 10◦ C temperature decrease [56]. The acute effect of temperature on the relaxation time and pacemaker firing rate of Sprague–Dawley rat CMs has also been reported [3]. Herein, we systematically measured the prolongation of hiPSC-CM relaxation 109283

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FIGURE 10. Contractile synchronization of dissociated hiPSC-CM clusters. (a) Six beating clusters, where the blue rectangles show their movement centers analyzed with CMaN. The action potential (AP) signal propagation between dissociated clusters became observable in the original video upon image processing. See Supplementary Material 3 for an example video. (b) Selected frames from Supplementary Material 3, where a passing brighter halo displays the AP propagation. The networking dynamic sequence starts from cluster 1 and advances up to cluster 6. (c) Beating signals from the six clusters, where the time delay between the signals is clear. (d) The time delay versus the cluster separation distance (cluster X – cluster C3, where X is C8 or C7 or C6 or C5 or C4 or C3) plots and the computed AP propagation velocities.

(analogue to the AP repolarization) and contraction times. Multiple voltage-gated ion channels presumably contribute to this; however, the exact quantification schemes of the dependence of most of the underlying mechanisms on environmental parameters (e.g., temperature, pO2 , pH, osmolarity 109284

and pCO2 ) are ambiguous, and accurate models have not yet been developed. We also measured the propagation of electrical activation between dissociated hiPSC-CM clusters using optical methods. The clusters, although physically separated, are VOLUME 8, 2020

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possibly connected to each other via cells (non-CMs) underneath, which act as a cardiac skeleton for mechanical scaffolding. Few studies using animal cells have confirmed the electrophysiological coupling of fibroblasts (of cardiac origin) with CMs to propagate contractions over finite distances [57]–[59]. Recently, some studies quantified the AP propagation distance and beating synchronization of certain CM types [7], [60], [61]. Herein, we quantified the synchronization delay for hiPSC-CMs using non-invasive image-based measurements and measured the AP propagation velocities (v = 1.98–3.88 mm/s at 28–37◦ C). The AP propagation velocities can obviously be a function of cell density, configuration (single cells, cell sheets, etc.), age, and maturation state. The software, CMaN, is freely available and in contrast to compared software programs, it is several times faster, more robust and sensitive, computationally less expensive, and allows easy ROI selection. This allows careful processing of specific areas/cells, for instance when frames contain multiple cells/clusters. Furthermore, CMaN extracts six components of contractile motion per processing, enabling a minimum of one useful beating signal even in complex scenarios, such as weak movements or overexposure/gamma by uneven background illumination. The signal from CMaN is analogous to ECG with both positive (upstroke) and negative (downstroke) segments that represent the contractile phenomena more exactly. This helps compute the beating frequency and contraction and relaxation phenomena separately. Additionally, CMaN has supplemental features for cluster finding and movement center detection. One limitation of CMaN is that it can currently only process avi files. If the input comes as a sequence of images, those have to be first converted into an avi file (for example using ImageJ or the script provided in the CMaN user manual). Currently, the mechanobiological analysis is performed in two stages: the first stage is the automatic signal extraction, and in the second stage, fine tuning (adjusting thresholds with sliders in GUI) may be required in the case of heavily noisy or complex beating scenarios. The software is an offline tool; however, the basic script for the affine flow computation is provided (see CMaN user manual), which can be edited for online automated beating analysis or other extended applications. One future direction is the measurement of contractile forces with beating signals by integrating a micro-displacement actuator (e.g., fluorescent beads, magnetic beads, micro-cantilevers). We are also developing cell and disease models in which the platform described herein is directly applied. V. CONCLUSIONS

We have described a system and software that allows the assessment of hiPSC derived CM contractions with changing temperatures. The highlights of the paper include the first reporting of 1) the nonlinear temperature dependence on the beating frequency of hiPSC-CMs, 2) the visualization of hiPSC-CM contractile networking and the non-invasive VOLUME 8, 2020

measurement of signal propagation between dissociated clusters, and 3) the release of an advanced and robust software that tracks multiple signals from CM beating videos. The system and software are useful additions to assay development and organ-on-chip experiments.

📖 中文全文 Chinese Full Text

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收到日期:2020年5月2日,录用日期:2020年5月15日,出版日期:2020年6月9日,当前版本日期:2020年6月23日。 数字对象标识符:10.1109/ACCESS.2020.3001191

心肌细胞:利用新型视频运动分析软件对解离簇间的温度响应与信号传播进行分析 DHANESH KATTIPPARAMBIL RAJAN 1(IEEE会员)、ANTTI-JUHANA MÄKI 1、MARI PEKKANEN-MATTILA 2(IEEE会员)、JOOSE KREUTZER 1、TOMI RYYNÄNEN 1、HANNU VÄLIMÄKI 1、JARMO VERHO 1、JUSSI T. KOIVUMÄKI 2,3、HEIMO IHALAINEN 1、KATRIINA AALTO-SETÄLÄ 2,3,4,5、PASI KALLIO 1 及 JUKKA LEKKALA 1 1 坦佩雷大学医学与健康技术系微纳系统研究小组,33720 坦佩雷,芬兰 2 坦佩雷大学医学与健康技术系心脏研究组,33520 坦佩雷,芬兰 3 坦佩雷大学医学与健康技术系计算生物物理与成像组,33520 坦佩雷,芬兰 4 坦佩雷大学医院心脏中心,33520 坦佩雷,芬兰 5 坦佩雷大学医学与健康科学学院临床医学系,33520 坦佩雷,芬兰

通讯作者:Dhanesh Kattipparambil Rajan(dhanesh.kr@tuni.fi) 本研究由芬兰商业局(原芬兰国家技术创新局 TEKES)通过“人类备用器官2”项目资助。

摘要 人诱导多能干细胞来源的心肌细胞(hiPSC-CMs)为心脏研究、制药工业及未来再生医学提供了功能强大的细胞与组织模型资源。在细胞模型实验中,环境参数的精确控制至关重要。温度是其中一项基本参数,此前已有研究探讨了温度对hiPSC-CM功能的急性影响。本文报道了hiPSC-CM培养物长期、系统的温度响应研究。实验在培养箱外进行,采用模块化细胞培养系统,并配备温度传感板(TSP)及新型搏动分析软件(CMaN——心肌细胞功能分析工具)。使用笨重的外部传感器难以在细胞实际位置实现精准测温;而集成电阻式微传感器的TSP则提供了一种简便的解决方案。实验结果表明,温度对hiPSC-CM搏动频率的影响呈非线性关系,其Q10温度系数约为2.2。温度不仅影响主动运动(收缩),也影响被动运动(舒张),且舒张时间的变化幅度大于收缩时间的变化。然而,收缩幅度的变异范围更大。此外,本文还首次展示了hiPSC-CM收缩网络的视觉化解离簇间的非侵入性图像测量信号传播。与现有工具相比,CMaN是一款先进、易用且鲁棒性强的软件,具有更快、更敏感、计算成本更低的特点,每次处理可提取六种不同的收缩运动信号,即使在复杂情况下也能获得至少一种有效的搏动信号。该软件还支持运动中心检测,并可独立计算舒张与收缩参数。 关键词:心肌细胞搏动分析软件;运动中心检测;心肌细胞温度响应;非线性温度依赖性;簇间信号传播

I. 引言 原代人心肌细胞(CMs)的可获取性有限,给基础与转化研究带来挑战。然而,人诱导多能干细胞(hiPSC)可分化为心肌细胞(hiPSC-CMs),从而为健康个体及遗传性心脏病患者提供无限的人源CM来源。hiPSC-CMs是一种极具前景的工具,可用于研究心脏与CM发育、心脏疾病建模以及未来再生医学应用[1],[2]。此外,由于其人源特性,它们克服了动物模型在药物筛选与毒理学研究中的局限性[3]。在hiPSC-CM实验模型中,O₂、CO₂、pH值和渗透压水平对维持CM功能至关重要。温度同样是关键参数,必须精心调控,以避免高热或低热状态对正常心脏活动造成干扰[4],[5]。冬眠实验表明,低体温可导致哺乳动物心脏代谢损伤[6]。此外,在培养CMs过程中,低体温已被报道会引起功能与细胞损伤以及场电位改变[7],[8]。一般而言,低热与高热均会诱导细胞应激,引发多种应激反应[9]。典型应激反应包括冷休克蛋白或热休克蛋白的表达,这可能对细胞关键功能产生不利影响[10]–[12]。低体温/复温(H/R)循环已知会降低肌丝Ca²⁺敏感性,并影响心脏动作电位(AP)与收缩力[13],[14]。动物模型研究也显示,H/R会影响肌节长度与心肌力生成[14]–[16]。总体而言,心肌对H/R耐受性较差,但其异常机制的全貌仍不清晰[14]。在实验室中,细胞在移出或移入培养箱时常经历温度冲击,可能影响细胞贴附[17]、pH值[18]及蒸发速率,从而引发非预期刺激与实验变异[18]–[21]。极端情况下,温度冲击可触发氧化损伤[10]并启动细胞死亡[22]。因此,识别并审慎评估hiPSC-CM的温度相关应激反应至关重要。 温度响应可通过多种方式研究,例如标准电生理方法、牵引力/原子力显微镜或视频显微镜[23]。当CMs从培养箱取出或在低温下研究时,常观察到搏动频率下降[23]。然而,使用笨重的外部传感器通常难以在细胞区域实现精确测温[24],许多既往研究中所报告的温度可能仅近似反映CMs实际经历的温度,原因在于难以将温度传感器紧密贴附于细胞。此外,据我们所知,目前尚未见关于系统性、自动化H/R温度应激联合hiPSC-CM机械生物学测量的报道。近期少数研究描述了H/R过程中的兴奋-收缩耦联及温度依赖性搏动同步化[14],[25],但这些研究使用的是动物CMs而非hiPSC-CMs。 本文采用先前报道的装置[26]及两项新增组件——1)集成微温度传感器的温度传感板(TSP),以及2)新型视频机械生物学分析软件(CMaN——心肌细胞功能分析工具),对hiPSC-CM在温度变化下的长期自动化机械生物学响应进行了评估。通过引入TSP,避免了传统笨重温度计的使用,CMs直接在TSP上培养,从而实现了对细胞区域温度的精确测量。根据实验数据分析,hiPSC-CM搏动频率对温度的依赖性呈非线性关系,此前未见报道。我们还计算了hiPSC-CMs的Q10温度系数[27]。同时,我们观察了解离簇间的收缩网络与搏动同步化现象,并测量了动作电位(AP)信号在簇间的传播。这是首次报道hiPSC-CM培养中此类事件及其通过图像处理实现的非侵入性测量。 新软件CMaN是一款易于使用的工具,可