Foods Foods 3129 foods foods Foods 2304-8158 Multidisciplinary Digital Publishing Institute (MDPI) PMC8228421 PMC8228421.1 8228421 8228421 34072292 10.3390/foods10061235 foods-10-01235 1 Article Characterization of Relevant Biomarkers for the Diagnosis of Food Allergies: An Overview of the 2S Albumin Family Bueno-Díaz Cristina 1 2 † Martín-Pedraza Laura 2 3 † Parrón Jorge 1 Cuesta-Herranz Javier 2 4 https://orcid.org/0000-0002-5351-8140 Cabanillas Beatriz 5 https://orcid.org/0000-0002-4678-7967 Pastor-Vargas Carlos 1 2 Batanero Eva 1 2 https://orcid.org/0000-0002-0042-9953 Villalba Mayte 1 2 * Casal Susana Academic Editor 1 Department of Biochemistry and Molecular Biology, Complutense University of Madrid, 28040 Madrid, Spain; crbueno@ucm.es (C.B.-D.); jparron@ucm.es (J.P.); cpasto01@ucm.es (C.P.-V.); ebataner@ucm.es (E.B.) 2 RETIC ARADyAL, Health Research Institute Carlos III, 28029 Madrid, Spain; lauramp627@gmail.com (L.M.-P.); j.cuestaherranz@gmail.com (J.C.-H.) 3 Molecular Allergology Group, Paul-Ehrlich Institut, 63225 Langen, Germany 4 Health Research Institute Fundación Jiménez Díaz (IIS-FJD, UAM), University Hospital Fundación Jiménez Díaz, 28040 Madrid, Spain 5 Department of Allergy, Research Institute Hospital 12 de Octubre, 28041 Madrid, Spain; beatriz.cabanillas@salud.madrid.org * Correspondence: mvillalb@ucm.es † Both authors contributed equally to the work. 29 5 2021 6 2021 10 6 384429 1235 25 3 2021 24 5 2021 29 05 2021 26 06 2021 04 05 2024 © 2021 by the authors. 2021 https://creativecommons.org/licenses/by/4.0/ Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license ( https://creativecommons.org/licenses/by/4.0/ ). 2S albumins are relevant and often major allergens from several tree nuts and seeds, affecting mainly children and young people. The present study aims to assess how the structural features of 2S albumins could affect their immunogenic capacity, which is essential to comprehend the role of these proteins in food allergy. For this purpose, twelve 2S albumins were isolated from their respective extracts by chromatographic methods and identified by MALDI-TOF mass-spectrometry. Their molecular and structural characterization was conducted by electrophoretic, spectroscopic and in silico methods, showing that these are small proteins that comprise a wide range of isoelectric points, displaying a general high structure stability to thermal treatment. Despite low amino acid sequence identity, these proteins share structural features, pointing conformational epitopes to explain cross-reactivity between them. Immunoblotting with allergic patients’ sera revealed those possible correlations between evolutionarily distant 2S albumins from different sources. The availability of a well-characterized panel of 2S albumins from plant-derived sources allowed establishing correlations between their structural features and their allergenic potential, including their role in cross-reactivity processes. food allergy 2S albumin biochemical characterization cross-reactivity anaphylaxis pmc-status-qastatus 0 pmc-status-live yes pmc-status-embargo no pmc-status-released yes pmc-prop-open-access yes pmc-prop-olf no pmc-prop-manuscript no pmc-prop-legally-suppressed no pmc-prop-has-pdf yes pmc-prop-has-supplement no pmc-prop-pdf-only no pmc-prop-suppress-copyright no pmc-prop-is-real-version no pmc-prop-is-scanned-article no pmc-prop-preprint no pmc-prop-in-epmc yes pmc-license-ref CC BY 1. Introduction Foods represent one of the greatest antigenic loads the human immune system must face, tolerance being the normal physiological response. However, the prevalence of allergic reactions against foods has increased in recent decades, being estimated that 3–4% of the adult population and nearly 5% of children in Western countries suffer any kind of food allergy [ 1 ]. Among potential allergenic foods, a significant percentage corresponds to those from plant sources, highlighting the contribution of tree nuts, spices, seeds and fruits since hypersensitivity reactions against them begin at early ages and often persist throughout the life of individuals [ 2 ]. These foods are also known for their benefits to human health, providing a large quantity of beneficial compounds, some of them not available in animal origin food. Moreover, they are not only additional components in meals or snacks, but also oils are obtained from them for their use in food and cosmetic industries. Currently, the development of new tools for food allergy diagnosis and management includes the employment of single isolated well-characterized allergens to identify those able to bind specific IgE (sIgE) from the patients’ serum. These diagnostic approaches, also known as component resolved diagnosis (CRD), seek for the identification of potential allergenic sources and for the establishment of a correlation between sensitization patterns of patients and the symptoms displayed, in order to obtain a personalized diagnosis [ 3 ]. Therefore, the isolation and characterization of food allergens from a biochemical and immunological point of view are highly relevant for their potential use in diagnosis, prevention and treatment of hypersensitivity reactions against foods. The seed storage proteins are the most abundant allergens from plant-derived sources since they constitute nearly 70% of the total protein content in seeds [ 4 ]. In general, storage proteins are synthetized at high levels in specific tissues and their primary structures contain high proportions of methionine and cysteine, being a great source of nutrients for the plant during germination. The sensitization to these proteins is related to the development of severe reactions, including gastrointestinal ones or even anaphylaxis [ 5 ]. Their structural characteristics may explain their allergenic potential, making them interesting candidates for new clinical approaches like immunotherapy or CRD. Among seed storage proteins, 2S albumins are considered relevant allergens from several plant-derived foods, affecting mainly to both children and the young people [ 6 ]. These are usually heterodimeric proteins whose structure is stabilized by disulfide bonds established through a highly conserved Cys pattern, providing them with high resistance to thermal and enzymatic treatments [ 7 ]. Consequently, these proteins are believed to resist food processing and digestion, reaching the intestinal lumen practically intact where they would interact with the immune system associated to the gut and initiating an allergic response. Their structural resemblance at three-dimensional (3D) level contrasts with the low conservation of their amino-acid sequence, which may have implications in patients’ sensitization profiles since it can involve cosensitization and cross-reactivity processes [ 8 ]. Most of the 2S albumins have been described as major allergens from their respective natural sources. They have also been considered markers of sensitization and potential triggers of anaphylaxis [ 9 , 10 ]. Their immunological relevance makes them suitable candidates for their implementation in precision diagnostic technologies. However, there is a lack of consistent studies regarding 2S albumins’ structural features and their implications neither sensitization patterns displayed by allergic patients nor their potential cross-reactivity. In the present work, we aimed to explore the structural characteristics of 2S albumins and their link with clinical manifestations displayed by allergic patients; moreover, we set out to highlight the cross-reactive potential of these allergens due to the availability of a wide panel of well-defined 2S albumins from several plant sources. 2. Materials and Methods 2.1. 2S Albumins Isolation and Identification Total protein extracts from tree nuts and seeds were obtained as previously described [ 11 ]. Protein profiles of each extract were analyzed in 17% SDS-PAGE ( Figure A1 ). 2S albumins were isolated by means of two chromatographic steps: first, a size exclusion chromatography using a Sephadex G-50 Medium column equilibrated with 0.15 M ammonium bicarbonate pH 8.0 at a flow rate of 3 mL/min. Second, a reverse phase-high performance liquid chromatography (RP-HPLC), using a C-18 reverse phase column, with an acetonitrile gradient from 0% to 60%. For Sin a 1 isolation, a SP-Sephadex C-25 ion exchange column was employed, in a 3–50 mM sodium pyrophosphate gradient. Once proteins were isolated, they were resuspended in 20 mM ammonium bicarbonate and stored at −20 °C. Protein concentration was determined by absorption spectroscopy, using a theoretical extinction coefficient (ε) for each protein, or by BCA method (Micro BCA protein assay kit, Thermo Scientific, Rockford, IL, USA) for those proteins whose theoretical ε was not available. Ara h 2 used for these experiments was purchased from Indoor Biotechnologies and although was included in the immunologic assays, it was not shown in the electrophoretic analysis. 2.2. Electrophoretic Procedures for Protein Characterization Extracts quality, protein purity and apparent molecular mass were monitored by SDS-PAGE using Mini-Protean II (Bio-Rad) systems with separating 17% polyacrylamide gels. Coomassie Brilliant Blue R-250 (Merk, Darmstadt, Germany) was employed for staining (CBS). Precision Plus Protein TM All Blue (Bio-Rad, Hercules, CA, USA) molecular mass leaders were used as reference. Two-dimensional-electrophoresis (2D SDS-PAGE) was performed with purified proteins (10 µg) to analyze their isoelectric points (pI) and further detection by CBS, employing for the first dimension the ReadyPrep™ 2D starter kit (Bio-Rad) and IPG strips (Bio-Rad, Hercules, CA, USA) pH 3–10 gradient. The second dimension was carried out in an SDS-PAGE as described above. 2.3. Circular Dichroism Circular dichroism (CD) studies were performed on a Jasco J-715 spectropolarimeter (Japan Spectroscopic Co., Tokyo, Japan) equipped with a CDF-426S Peltier temperature-control system interfaced with a NESLAB RTE111 water bath. Far-UV CD spectra were recorded at 20 and 85 °C in a 0.1 cm-pathlength quartz cuvette (200 µL) (Hellma, Baden-Wuerttemberg, Germany) at protein concentrations of 0.2–0.5 µg/µL. All samples were solved in 20 mM ammonium bicarbonate, pH 8.0. Spectra were recorded at 50 nm/min, and control buffer baseline was subtracted. Thermal denaturation was monitored by recording the [ θ ] 220 (molar ellipticity at a fixed wavelength of 220 nm) while heating or cooling at 1 °C/min. The results are expressed as mean residue weight (MRW) molar ellipticity: (1) [ θ ] M R W = θ × M C × l × 10 where θ is the observed ellipticity, M is the average molecular weight per residue, C is protein concentration (mg/mL) and l optical pathlength (cm). 2.4. Computational Tools for the Analysis of 2S Albumins Structural Features Signal peptide prediction: Signal P 5.0 (ExPASy) online program based on artificial neuronal networks ( http://www.cbs.dtu.dk/services/SignalP ). Sequence alignment: proteins sequences were obtained from NCBI Protein or UniProt databases. Sequences alignment was performed using ClustalW program ( https://www.ebi.ac.uk/Tools/msa/clustalo ). Tertiary structure prediction and representation: automatic modelling of proteins using Swiss-Model tool (ExPASy) based on protein sequence similarity ( https://swissmodel.expasy.org/ ). Brazil nut 2S albumin, Ber e 1, was employed as the template (2LVF, PDB). 2.5. Western Blotting with Patients’ Sera Sera from allergic patients were used for testing and characterizing the potential allergenicity. Patients were recruited from Allergy Service of five Spanish hospitals from Madrid. Written informed consent was obtained from all patients. The work was performed accomplishing the Ethic Guidelines of Complutense University of Madrid Pools for immunoassays were composed by four patients sera, whose specific clinical features were previously described in works of the group [ 12 , 13 , 14 ]. In general, they reported food allergy against a single source, displaying, positive skin prick test (SPT, bump diameter >3 mm) and/or sIgE levels (>1 kU/L) determined by ImmunoCAP (Thermo Scientific, Rockford, IL, USA). Patients sera were pooled together according to the source against which they described food allergy: peanut, cashew nut, hazelnut, mustard seed, pine nut, pumpkin seed or flaxseed. Sera from non-atopic individuals were employed as negative control for immunoassays. Purified proteins (2 µg) were blotted onto nitrocellulose membranes (GE Healthcare Life Sciences, Marlborough, MA, USA) after SDS-PAGE. Immunodetection of proteins was performed, by using individual or an equivolumetric pool of two patients sera, in both cases diluted 1:5 in 3% skim milk powder (SMP) with PBS containing 0.1% Tween20 (PBS-T). Binding of human IgE was detected with mouse anti-human IgE monoclonal antibody (1:5000 diluted) kindly provided by ALK-Abelló (Madrid, Spain), followed by horseradish peroxidase-labelled rabbit anti-mouse IgG polyclonal antibody (1:2000 diluted; Pierce, Rockford, IL, USA). The chemiluminescent signal was developed by ECL-Western blotting reagent and detected in a luminescent imager analyzer LAS3000 (Fujifilm, Tokio, Japan). Quantitation of the signal was performed in triplicate using the computer program Multigauge V3.0 (Fujifilm, Tokio, Japan). 3. Results 3.1. Experimental Characterization of Isolated 2S Albumins 3.1.1. The Polymorphic Nature of 2S Albumins To elucidate and compare the structural features of the 2S albumin family, twelve 2S albumins were obtained from their respective sources: Ana o 3 (cashew nut), Pis v 1 (pistachio nut), almond 2S albumin, Cor a 14 (hazelnut), Jug r 1 (walnut), Pin p 1 (pine nut), Sin a 1 (mustard seed), Lin u 1 (flaxseed), Ses i 1 (sesame seed), Cuc ma 5 (pumpkin seed), melon 2S albumin and Act d 13 (kiwi seed). SDS-PAGE of all isolated proteins showed low molecular masses ranging from 12 to 15 kDa ( Figure 1 A). In the presence of the reducing agent βME, ten out of twelve 2S albumins were split into two polypeptide chains: a large chain around 8–10 kDa and a small one around 3–5 kDa, a common feature attributed to these allergens ( Figure 1 B). As expected, walnut and pine nut albumins, Jug r 1 and Pin p 1, displayed a single polypeptide chain under reducing conditions as previously reported [ 15 , 16 ]. However, the loss of intrachain disulfide bridges in reducing conditions modified their electrophoretic mobilities. Moreover, this behavior contrasts with that observed for Ana o 3 and Cor a 14, which exhibited three polypeptide chains in their structures ( Figure 1 B). These results may indicate the presence of isoforms for these proteins due to different proteolytic processing of 2S albumins in the seed. To evaluate the presence of isoforms in all the 2S albumins, 2D SDS-PAGE were assayed ( Figure 2 ). Broad isoelectric points (pI) differences were detected in all proteins considering the great variability of their primary structures. Moreover, the polymorphic nature of these 2S albumins was elucidated (e.g., Ana o 3, Cor a 14 and Cuc ma 5) as indicated by the polypeptide chain isoforms (number of spots) that displayed similar molecular masses but different pI values. 3.1.2. Structural Behavior of 2S Albumins to Thermal Treatment The high structural stability against thermal treatment attributed to the 2S albumin family was analyzed by spectroscopic assays. CD at far-UV of the purified proteins brought up that this behavior was not as generalized as expected ( Figure 3 ). All 2S albumins exhibited a well-folded structure mainly composed of α-helical motives. Pin p 1 exhibited higher random coil contribution than the others. Nevertheless, most of the proteins presented a partial loss of their initial structure when heated at 85 °C. In general, the increase in temperature affected the global structure of these proteins. The reduction of ellipticity and displacement of CD spectra’ minimum indicate an increment on random coil motives contribution. Importantly, only Sin a 1, melon seed 2S albumin and Pin p 1 retained their original structures after heating at 85 °C, indicating their structural stability under thermal processing. When cooling back to 20 °C, only Cor a 14 and Act d 13 completely recovered their initial structures, while 2S albumins from almond and Cuc ma 5 did it partially. It is remarkable that Jug r 1 was able to denature and completely renature after heat treatment. As shown in Figure 3 , walnut 2S albumin ellipticity dramatically decreased when heating at 85 °C shifting the CD spectrum to the left, indicating an increment in the contribution of random conformation. When cooling back to 20 °C, the protein fully recovered its initial structure. Pis v 1, Ana o 3, Ses i 1 and Lin u 1 do not completely loose the structure after the heat treatment but they do not recover their initial structures after cooling down. A possible aggregation of these proteins has been suggested at high temperatures, as reported for Ara h 2 [ 17 ]. 3.2. In Silico Analysis of the 2S Albumin Structures 2S albumin primary and tertiary structures were analyzed by computational methods, employing bioinformatic tools for sequence alignment (GeneDoc) and prediction of 3D structure (Swiss-Prot). Signal peptides determined with SignalP online tool were not considered in these analyses. Sequence alignment was performed in the first place with complete amino acid sequences ( Figure 4 ), followed by those of light ( Figure 5 ) and heavy chains ( Figure 6 ), separately. 2S albumins are encoded by multigene families, with a complex processing, which leads to different sequences with a low similarity among biological sources [ 7 , 8 ]. As detailed in Figure 4 , protein sequences showed identity degrees oscillating around 18–39%. Only Pis v 1 and Ana o 3 from pistachio and cashew nut, reached values of around 62%. In general, despite the cysteine pattern and the regions spanning it, the remaining sequence seems to have a low sequence identity degree. Considering the alignment of the light chains ( Figure 5 ), identity percentages were below 40%, even when comparing those chains from phylogenetically related sources, like Ana o 3 and Pis v 1. However, when heavy chain alignment was analyzed ( Figure 6 ), identity percentages up to 67% were observed in the case of Ana o 3 and Pis v 1 and up to 60% in the case of Jug r 1 and Cor a 14. Nevertheless, inside heavy chains there is a segment that exhibits low similarities between 2S albumins known as the “hypervariable region”, which is located between the fourth and fifth Cys residues. To better understand the possible structural similarities among 2S albumins, 3D structures of these proteins were studied ( Figure 7 A). 2S Albumins were characterized by a compact bundle of 4–5 α-helices with a C-terminal loop. The high similarity between the 3D structures of these proteins might indicate the presence of conserved structural epitopes between them [ 18 ], even in poorly preserved amino acid sequences. In addition to the structural epitopes, the hypervariable region , which contains some of the most immunogenic epitopes described for these proteins [ 7 , 8 ], is located in an exposed loop between the fourth and fifth helix ( Figure 7 B), facilitating the access of the immune system to the epitopes located in this area. In conclusion, despite the general low resemblance between 2S albumins primary structure, the presence of some preserved epitopes at sequential and structural levels indicates the cross-reactive potential of these proteins even in non-related sources. 3.3. The Link between the Structure and the Allergenicity of 2S Albumins Immunological assays employing allergic patients’ sera may reveal possible correlations between structural characteristics and immunogenicity displayed by 2S albumins. In the preliminary analysis showed in Figure 8 , possible protein clusters recognized by the pools of patients sensitized to 2S albumins were detected. Firstly, the exclusive recognition of the 2S albumins from pine nut and flaxseed in their respective cohort of patients was observed. Other groups of patients reacted to at least two or more different sources. In the case of hazelnut, only two proteins were recognized by this cohort of patients, Cor a 14 and Jug r 1. This suggests a possible cross-reactivity between these two nuts since both proteins are phylogenetically related and they show a higher sequence identity as mentioned previously, suggesting the presence of shared epitopes in both proteins. Similar findings were obtained between cashew nut and pistachio, both Anacardiaceae members, showing Ana o 3 and Pis v 1 in the corresponding patient serum cohort. Moreover, patients allergic to peanut, mustard seed and pumpkin seed showed, not only their respective 2S albumins, but also those from other non-related sources, such as almond, hazelnut, walnut, mustard seed and melon seeds albumins. Similarly, patients allergic to mustard seeds through Sin a 1 reacted to walnut, pine nut, flaxseed and sesame seed albumins. Previous data reported by our group showed this cross-reactivity between pumpkin seed or mustard seed and pine nut through their 2S albumins [ 12 , 14 ], although identity between both allergens was below 50%. These results, in combination with those here exposed, suggest a wider cross-reactivity potential of 2S albumins than previously thought. 4. Discussion The study of the structural properties involved in the allergenicity of certain proteins has been the focus of research in the last decades [ 8 ]. 2S albumins stand out as major allergens in several plant-based foods widely consumed by the population. Several studies have reported the impact of 2S albumins in the development of severe systemic symptoms in allergic patients [ 19 , 20 ]. The present work describes the obtention for the first time of twelve allergenic 2S albumins from different foods, some of them recently introduced in our diet, such as melon or pumpkin seeds. All of them have been isolated by similar procedures with minor modifications and fully characterized. This comparative study at the structural and immunological level has seeded light to understand the relation between the structural characteristics of these proteins and their impact in food allergy [ 21 ]. 2S albumins are included in the low molecular mass proteins fraction (below 20 kDa) ( Figure A1 ). Their abundance in seeds and nuts has been linked to an increased risk of allergic sensitization, as some of these proteins account for almost 30% of the total content [ 22 , 23 ]. 2S albumins belong to multigene families and undergo different proteolytic maturation, resulting in different isoforms, which contribute to their higher proportion relative to other seed proteins. Here, we demonstrated the presence of isoforms in Ana o 3, Cor a 14 and Cuc ma 5 proteins, as they split into more than two polypeptide chains with different length when treating them with reducing agents in both mono and 2D-electrophoresis. The disulfide bridges found in 2S albumins provide a compact structure that is stable to heat and enzymatic treatments [ 16 , 24 ]. In these terms we found that Sin a 1, melon seed 2S albumin and Pin p 1 were not affected by heating and retained their native structures. However, CD spectra revealed that most of the proteins suffered a partial loss of their native structure when heating at 85 °C, and only some of them recovered it after the initial conditions were restored such as Jug r 1, Act d 13 and Cor a 14. Moreover, Ana o 3, Pis v 1 and Ses i 1 did not recover their initial conformations when cooling back to 20 °C. This behavior was previously described for other 2S albumins, attributing to protein aggregation at high temperatures this loss of structure and therefore affecting their allergenicity, as reported for Ara h 2 by Starkl et al. [ 25 ]. Some food processing steps in industry require high temperatures. It is believed that most of the epitopes presented in the 2S albumins are not affected due to their structural stability and therefore, are accessible for immune system recognition. However, allergens respond differently depending on the food processing step to which they are submitted [ 26 ]. Thermal treatments may lead to chemical modifications of allergens in the presence of other compounds of the food matrix (e.g., carbohydrates, lipids, etc.), altering crucial epitopes or creating new ones. Under this scenario, most of the studies have been done in peanut allergens [ 27 , 28 ], showing that Ara h 2 allergenicity capacity increases after the glycation of certain residues through the Maillard reaction [ 29 ]. Future studies should assess chemical modifications in other ubiquitous sources, like spices or seeds (e.g., mustard or sesame seeds), thus it would provide very valuable information about proteins’ allergenicity, which may be enhanced or reduced by either food processing or components present in the mixture [ 30 ], making some products safer or riskier for allergic patients. Computational tools have helped to deep in the structural characteristics of proteins and the implications for their allergenicity [ 31 ]. Amino acid sequence alignment revealed that only residues surrounding the cysteine patterns exhibit higher identities when comparing with the whole sequence. This may be due to the structural role of these residues since they are involved in the maintenance of the tertiary structure of 2S albumins [ 32 ]. The hypervariable region , located in the most exposed area of these proteins, presents the lowest identity values and the most immunogenic epitopes that have been described in of some the 2S albumins [ 8 , 33 ] ( Figure 7 B). Due to its low sequence preservation, it has been believed that those epitopes are not involved in the cross-reactivity but polysensitization of atopic patients [ 8 ]. Only phylogenetically related allergens exhibit higher similarities in this area, as it is the case of Brassicaceae 2S albumins [ 34 , 35 ] or the Anacardiaceae members [ 13 ]. Unlike the primary structure, the 3D conformation seems to be highly conserved across 2S albumins from different sources. Recent studies have predicted and analyzed already described structural epitopes from several 2S albumins [ 36 ], highlighting Ara h 2 due to its potential cross-reactivity with albumins from tree nuts and sesame seeds and its clinical implications in food allergy. The structural conformation displayed by 2S albumins is similar to other proteins also described as food allergens, the nsLTPs. However, they exhibit a more conserved amino acid sequence and are considered panallergens that are involved in cross-reactivity processes [ 37 ]. Moreover, their ability to binding lipids confers them the protection against digestion [ 38 ]. The capacity of some 2S albumins to interact with lipids has been previously described [ 39 ], although the presence of a specific lipid-binding cavity in these allergens has not been clearly demonstrated [ 40 , 41 ]. In the case of Ber e 1, the major allergen and 2S albumin from Brazil nut, its interaction with lipids has been described as necessary for the oral sensitization against this allergen and for its protection against enzymatic digestion in murine models [ 41 , 42 ]. It is required more evidences to understand how lipid interactions affect to the 2S albumins allergenicity. Finally, the immunological assays with blood serum from allergic patients revealed the different possible scenarios in food allergy mediated by 2S albumins. Patients allergic to plant-derived foods often suffer from hypersensitivity reactions from several sources. There are two possible explanations: first, a multiple and independent primary sensitization to several 2S albumins from different sources, with no immunological correlations between them. Additionally, second, a potential cross-reactivity process among albumins clusters even if they are evolutionary distant could occur. The presence of preserved epitopes among both proteins has been recently reported [ 43 ]. Potential cross-reactivity of these allergens and its implications at the clinical level has been reported by our group [ 13 ], describing for the first time a pistachio-cashew nut allergic syndrome in a well-characterized group of patients whose severe symptomatology was related to the sensitization to Anacardiaceae 2S albumins and the cross-reactivity processes between them. Recent information regarding 2S albumins structure has pointed out the presence of preserved epitopes among non-related sources. Epitope mapping of Pin p 1 revealed shared epitopes with albumins from peanut, sesame seed and hazelnut, among others [ 44 ], while studies conducted with allergic patients showed Pin p 1 cross-reaction with Sin a 1 [ 12 ] and Cuc ma 5 [ 14 ]. These results support the existence of conserved epitopes in 2S albumins. Their implications in clinical manifestations displayed by a larger cohort of patients will provide useful information that can be employed at the clinical level to improve patients’ diagnosis and management. Future studies should evaluate if in vitro results can be extrapolated to clinical manifestations of patients, or if this cross-reactivity among 2S albumins remains experimental but not of clinical relevance. 5. Conclusions The availability of a panel of highly purified food allergens has allowed their structural characterization employing biochemical, spectroscopic, immunological and in silico techniques. The results extracted from those analyses have supposed a step forward in the comprehension of how protein structural features are involved in their allergenic capacity: abundance, polymorphism, structure stability and epitopes disposition and preservation. Immunological assays with small allergic patients’ cohorts have allowed one to establish the potential allergenic associations between the 2S albumins from different sources. Although this work brings together for first time the structural and immunological features of twelve allergens from the same family, additional clinical studies with broader allergic populations are still needed to corroborate the clinical relevance of their cross-reactivity potential. Nevertheless, the present work highlights the importance of 2S albumins as markers of food allergy, not being restricted only to genuine sensitization but also to potential cross-reactivity processes. The employment of these proteins in molecular diagnosis approaches like component resolved diagnosis may improve patients’ characterization, diagnosis and treatment. Acknowledgments We would like to thank Sara Abián and the Proteomic Unit from the Complutense University of Madrid for their excellent technical support. We thank Begoña Lavin her valuable English language editing of the manuscript. Publisher’s Note: MDPI stays neutral with regard to jurisdictional claims in published maps and institutional affiliations. Author Contributions Conceptualization, C.B.-D., J.C.-H., and M.V.; methodology, C.B.-D., J.P., E.B.; software, C.B.-D., L.M.-P.; validation, C.B.-D., L.M.-P., C.P.-V.; formal analysis, C.B.-D., L.M.-P., J.P.; investigation, C.B.-D., M.V.; resources, J.C-H., B.C., M.V.; data curation, C.B.-D., M.V.; writing—original draft preparation, C.B.-D., M.V.; writing—review and editing, C.B.-D., J.P., C.P.-V., B.C., J.C.-H., E.B., M.V.; supervision, M.V.; funding acquisition, M.V. All authors have read and agreed to the published version of the manuscript. Funding This work was supported by grants SAF2017-86483-R from the Ministerio de Economía y Competitividad and ISCIII co-founded by FEDER funds for the Thematic Networks and Co-operative Research Centres: ARADyAL (RD16/0006/0013; RD16/0006/0014). CB-D is supported by an FPU fellowship from the Spanish Ministry of Education (FPU15/0100). Data Availability Statement The data presented in this study are available on request from the corresponding author. Conflicts of Interest The authors declare no conflict of interest. Appendix A Figure A1 SDS-PAGE profiles of total protein extracts from plant-derived sources. Electrophoresis were conducted under non-reducing (−βME) ( A ) and reducing (+βME) ( B ) conditions, last one by treating samples with reducing agent βME for 10 min at 90 °C. References 1. Sicherer S.H. Sampson H.A. Food allergy J. Allergy Clin. Immunol. 2010 125 S116 S125 10.1016/j.jaci.2009.08.028 20042231 2. Weinberger T. Sicherer S. 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CBS: Coomassie Blue Staining. Figure 2 2D SDS-PAGE of the isolated 2S albumins. Spots corresponding to isolate protein polypeptide chain isoforms are boxed. Isoelectric points (pI) of each isoform are indicated. Molecular mass markers (Mw) are indicated with arrows. Figure 3 Spectroscopic characterization by circular dichroism at far-UV of 2S albumins. Spectra were measured at 20 °C (---), at 85 °C (----) and cooling down again at 20 °C (····). Figure 4 Sequence alignment of isolated 2S albumins. Primary structures of 2S albumins were aligned with ClustalW online tool. The table under alignment shows percentages of identity (% I, dark grey) and similarity (% S, light grey) between the different proteins. Discontinuous line boxes indicate the proteolytic cleavage area between light and heavy chains, while continuous line boxes indicate the hypervariable region. Figure 5 Amino acid sequence alignment of isolated 2S albumins light chains. The table under alignment shows percentages of identity (% I, dark grey) and similarity (% S, light grey). Figure 6 Amino acid sequence alignment of isolated 2S albumins heavy chains. The table under alignment shows percentages of identity (% I, dark grey) and similarity (% S, light grey). Continuous line boxes indicate the hypervariable region. Figure 7 In silico modeling of 2S albumins three-dimensional structure. ( A ) Three-dimensional modeling of isolated 2S albumins, using the annotated structure of Ber e 1 (Brazil nut 2S albumin) as the template. nsLTP from peach, Pru p 3, has been included for comparative purposes. ( B ) Hypervariable region from mustard seed allergen, Sin a 1, and zoom into one of its allergenic epitopes located in this region. Figure 8 Immune detection of isolated 2S albumins tested in blood serum of different patient cohorts. A pool of non-atopic patients was employed as control.
Characterization of Relevant Biomarkers for the Diagnosis of Food Allergies: An Overview of the 2S Albumin Family
食物过敏诊断相关生物标志物的研究:2S白蛋白家族综述
📄 中文摘要 Chinese Abstract
📋 英文结构化总结 English Structured Summary
全文整理
Background:
Food allergy is a growing health concern, particularly in Western countries, affecting 3–4% of adults and nearly 5% of children. Plant-derived foods such as tree nuts, seeds, and spices are major contributors, with 2S albumins identified as key allergens due to their abundance, structural stability, and resistance to digestion. These seed storage proteins are often linked to severe allergic reactions, including anaphylaxis, and are considered markers for sensitization. Despite low amino acid sequence identity across species, 2S albumins share conserved structural features that may drive cross-reactivity, complicating diagnosis and management. This study aims to characterize a panel of twelve 2S albumins from diverse plant sources to explore the relationship between their structural properties and allergenic potential.
Methods:
Twelve 2S albumins were isolated from tree nuts and seeds—including cashew, pistachio, almond, hazelnut, walnut, pine nut, mustard, flaxseed, sesame, pumpkin, melon, and kiwi—using chromatographic techniques (size exclusion, RP-HPLC, and ion exchange). Proteins were identified via MALDI-TOF mass spectrometry and characterized using SDS-PAGE, 2D electrophoresis (for pI and isoform analysis), and far-UV circular dichroism (CD) to assess secondary structure and thermal stability. In silico analyses included sequence alignment (ClustalW), signal peptide prediction (SignalP), and 3D structure modeling (Swiss-Model). Immunological reactivity was evaluated by Western blotting using pooled sera from allergic patients with confirmed sensitizations to specific plant foods.
Results:
All twelve 2S albumins exhibited molecular masses of 12–15 kDa, with most splitting into two chains (8–10 kDa and 3–5 kDa) under reducing conditions, confirming their heterodimeric nature. Several proteins (e.g., Ana o 3, Cor a 14, Cuc ma 5) showed multiple isoforms with varying isoelectric points, indicating polymorphism. CD spectroscopy revealed that while most 2S albumins are α-helically folded and partially unfold at 85°C, only Sin a 1, melon 2S albumin, and Pin p 1 retained native structure after heating. Upon cooling, only Jug r 1, Act d 13, and Cor a 14 fully renatured. Sequence alignment showed low overall identity (18–39%), except between closely related species like Ana o 3 and Pis v 1 (~62%). However, 3D modeling revealed a conserved compact helical bundle with a C-terminal loop, suggesting structural epitopes may drive cross-reactivity. Immunoblotting demonstrated both specific and cross-reactive IgE recognition patterns; for example, patients allergic to hazelnut reacted to Cor a 14 and Jug r 1, while those sensitized to mustard recognized Sin a 1 along with albumins from walnut, pine nut, flaxseed, and sesame.
Data Summary:
The study isolated and characterized twelve 2S albumins with molecular weights between 12–15 kDa and isoelectric points spanning a broad range (pH 3–10). Thermal stability varied: Sin a 1, Pin p 1, and melon 2S albumin retained structure at 85°C, while others partially denatured. Sequence identity ranged from 18% to 62%, with the highest similarity in heavy chains (up to 67% between Ana o 3 and Pis v 1). Despite low sequence conservation, 3D structures were highly similar. Immunological assays revealed cross-reactivity even among evolutionarily distant 2S albumins, with patient sera recognizing multiple non-related allergens.
Conclusions:
This work provides the first comprehensive comparative analysis of twelve structurally and immunologically characterized 2S albumins from diverse plant sources. Key findings include the role of structural stability, polymorphism, and conserved conformational epitopes in allergenicity and cross-reactivity. Although primary sequences diverge significantly, shared 3D architectures likely underlie observed IgE cross-reactions. These insights support the use of 2S albumins as biomarkers in component-resolved diagnosis (CRD) and highlight their clinical relevance beyond primary sensitization, particularly in polysensitized patients.
Practical Significance:
The detailed biochemical and immunological profiling of 2S albumins enhances molecular diagnostic accuracy for food allergies, enabling better differentiation between genuine sensitization and cross-reactivity. This can guide personalized risk assessment, improve patient management, and inform the development of safer food processing strategies. Furthermore, these well-characterized allergens are promising candidates for inclusion in next-generation CRD platforms and potential immunotherapies targeting severe plant-food allergies.
📋 中文结构化总结 Chinese Structured Summary
背景:
食物过敏是一个日益严重的健康问题,特别是在西方国家,影响着3-4%的成年人和近5%的儿童。树坚果、种子和香料等植物源性食物是主要致敏原,其中2S白蛋白因其丰度、结构稳定性和抗消化能力被确定为关键过敏原。这些种子贮藏蛋白通常与严重的过敏反应(包括过敏反应)有关,并被认为是致敏的标志物。尽管跨物种间的氨基酸序列同一性较低,但2S白蛋白具有保守的结构特征,这可能驱动交叉反应性,从而使诊断和管理复杂化。本研究旨在表征来自不同植物来源的12种2S白蛋白,以探讨其结构特性与致敏潜能之间的关系。
方法:
使用色谱技术(尺寸排阻、RP-HPLC和离子交换)从树坚果和种子(包括腰果、开心果、杏仁、榛子、核桃、松子、芥末、亚麻籽、芝麻、南瓜、甜瓜和猕猴桃)中分离出12种2S白蛋白。通过MALDI-TOF质谱法鉴定蛋白质,并使用SDS-PAGE、2D电泳(用于pI和同工型分析)和远紫外圆二色谱(CD)评估二级结构和热稳定性以进行表征。生物信息学分析包括序列比对(ClustalW)、信号肽预测(SignalP)和3D结构建模(Swiss-Model)。通过蛋白质印迹法,使用对特定植物性食物有确认致敏的过敏患者混合血清评估免疫反应性。
结果:
所有12种2S白蛋白均表现出12-15 kDa的分子量,大多数在还原条件下分裂为两条链(8-10 kDa和3-5 kDa),证实了其异二聚体性质。几种蛋白质(如Ana o 3、Cor a 14、Cuc ma 5)显示出具有不同等电点的多种同工型,表明存在多态性。CD光谱显示,虽然大多数2S白蛋白呈α-螺旋折叠并在85°C下部分展开,但只有Sin a 1、甜瓜2S白蛋白和Pin p 1在加热后保留了天然结构。冷却后,只有Jug r 1、Act d 13和Cor a 14完全复性。序列比对显示总体同一性较低(18-39%),但亲缘关系密切的物种之间除外,如Ana o 3和Pis v 1(约62%)。然而,3D建模揭示了保守的紧凑螺旋束和C端环,表明结构表位可能驱动交叉反应性。免疫印迹显示了特异性和交叉反应性IgE识别模式;例如,对榛子过敏的患者对Cor a 14和Jug r 1有反应,而对芥末致敏的患者识别Sin a 1以及来自核桃、松子、亚麻籽和芝麻的白蛋白。
数据总结:
该研究分离并表征了12种2S白蛋白,其分子量在12-15 kDa之间,等电点跨越较宽范围(pH 3-10)。热稳定性各异:Sin a 1、Pin p 1和甜瓜2S白蛋白在85°C下保留了结构,而其他则部分变性。序列同一性从18%到62%不等,重链的相似性最高(Ana o 3和Pis v 1之间高达67%)。尽管序列保守性较低,但3D结构高度相似。免疫学检测揭示了即使在进化上较远的2S白蛋白之间也存在交叉反应性,患者血清可识别多种非相关过敏原。
结论:
本研究首次对来自不同植物来源的12种在结构和免疫学上已表征的2S白蛋白进行了全面的比较分析。主要发现包括结构稳定性、多态性和保守的构象表位在致敏性和交叉反应性中的作用。尽管一级序列差异显著,但共享的3D结构可能是观察到的IgE交叉反应的基础。这些见解支持将2S白蛋白作为组分解析诊断(CRD)中的生物标志物,并突出了其超越初级致敏的临床相关性,特别是在多致敏患者中。
实际意义:
对2S白蛋白详细的生化和免疫学分析提高了食物过敏的分子诊断准确性,能够更好地区分真实致敏与交叉反应性。这可以指导个性化的风险评估,改善患者管理,并为开发更安全的食品加工策略提供信息。此外,这些表征明确的过敏原是纳入下一代CRD平台和针对严重植物性食物过敏的潜在免疫疗法的有前途的候选者。
📖 英文全文 English Full Text
📖 中文全文 Chinese Full Text
# 2S白蛋白家族相关生物标志物在食物过敏诊断中的特征概述
2S白蛋白是多种树坚果和种子中相关且通常为主要的过敏原,主要影响儿童和青少年。本研究旨在评估2S白蛋白的结构特征如何影响其免疫原性,这对于理解这些蛋白质在食物过敏中的作用至关重要。为此,通过色谱方法从相应提取物中分离出十二种2S白蛋白,并通过MALDI-TOF质谱法进行鉴定。采用电泳、光谱和计算机模拟方法对其分子和结构特征进行了分析,结果表明这些是小分子量蛋白质,具有广泛的等电点范围,对热处理表现出较高的结构稳定性。尽管氨基酸序列同源性较低,但这些蛋白质具有共同的结构特征,提示存在构象表位以解释它们之间的交叉反应性。使用过敏患者血清进行的免疫印迹揭示了来自不同来源的进化距离较远的2S白蛋白之间可能的相关性。获得的一组来自植物来源的、表征完善的2S白蛋白,使得能够建立其结构特征与致敏潜力(包括在交叉反应过程中的作用)之间的关联。
## 1. 引言
食物代表了人类免疫系统必须面对的最大抗原负荷之一,而耐受是正常的生理反应。然而,近几十年来,对食物的过敏反应发生率有所上升,据估计,西方国家约3–4%的成年人和近5%的儿童患有某种类型的食物过敏\[1\]。在潜在致敏食物中,相当大比例来自植物来源,其中树坚果、香料、种子和水果的贡献尤为突出,因为针对它们的超敏反应始于幼年时期,并往往持续终生\[2\]。这些食物还以其对人类健康的益处而闻名,提供了大量有益化合物,其中一些在动物来源食物中无法获得。此外,它们不仅仅是膳食或零食中的附加成分,还可从中提取油脂用于食品和化妆品工业。
目前,食物过敏诊断和管理新工具的开发包括使用单一分离的、表征良好的过敏原,以识别那些能够与患者血清中特异性IgE(sIgE)结合的过敏原。这些诊断方法也称为组分解析诊断(component resolved diagnosis, CRD),旨在识别潜在的致敏来源,并建立患者致敏模式与所表现症状之间的相关性,以获得个性化诊断\[3\]。因此,从生化和免疫学角度对食物过敏原进行分离和表征,对于其在食物过敏反应诊断、预防和治疗中的潜在应用具有重要意义。
种子储存蛋白是植物来源食物中最丰富的过敏原,因为它们几乎占种子总蛋白含量的70%\[4\]。一般来说,储存蛋白在特定组织中高水平合成,其一级结构含有高比例的甲硫氨酸和半胱氨酸,是植物萌发期间的重要营养来源。对这些蛋白质的致敏与严重反应的发生有关,包括胃肠道反应甚至过敏性休克\[5\]。它们的结构特征可以解释其致敏潜力,使其成为免疫疗法或CRD等新临床方法的有前景的候选物。
在种子储存蛋白中,2S白蛋白被认为是几种植物来源食物中的重要过敏原,主要影响儿童和青少年\[6\]。这些蛋白质通常是异源二聚体,其结构由通过高度保守的Cys模式形成的二硫键稳定,赋予其对热处理和酶处理的高度抗性\[7\]。因此,据信这些蛋白质能够抵抗食物加工和消化,几乎完整地到达肠道腔,在那里与肠道相关免疫系统相互作用并引发过敏反应。尽管其氨基酸序列保守性较低,但这些蛋白质在三维(3D)水平上具有结构相似性,这可能对患者的致敏谱产生影响,因为它可能涉及共致敏和交叉反应过程\[8\]。
大多数2S白蛋白被描述为其相应天然来源的主要过敏原。它们还被认为是致敏的标志物和过敏性休克的潜在触发因素\[9,10\]。它们的免疫学相关性使其适用于精准诊断技术的实施。然而,关于2S白蛋白的结构特征及其对过敏患者致敏模式或潜在交叉反应性的影响,目前缺乏系统的研究。在本工作中,我们旨在探索2S白蛋白的结构特征与过敏患者临床表现之间的联系;此外,鉴于可获得来自多种植物来源的广泛的、定义明确的2S白蛋白,我们还着重强调了这些过敏原的交叉反应潜力。
## 2. 材料与方法
### 2.1. 2S白蛋白的分离与鉴定
如前所述\[11\],从树坚果和种子中获得总蛋白提取物。通过17% SDS-PAGE分析每种提取物的蛋白质谱(图A1)。通过两步色谱法分离2S白蛋白:首先,使用Sephadex G-50 Medium柱进行尺寸排阻色谱,以0.15 M碳酸氢铵(pH 8.0)平衡,流速为3 mL/min。其次,使用C-18反相柱进行反相高效液相色谱(RP-HPLC),乙腈梯度为0%至60%。对于Sin a 1的分离,使用SP-Sephadex C-25离子交换柱,采用3–50 mM焦磷酸钠梯度。蛋白质分离后,将其重悬于20 mM碳酸氢铵中,并在-20°C下保存。通过吸收光谱法使用每种蛋白的理论消光系数(ε)测定蛋白浓度;对于无法获得理论ε的蛋白质,则采用BCA法(Micro BCA蛋白测定试剂盒,Thermo Scientific,Rockford,IL,USA)。本实验中使用的Ara h 2购自Indoor Biotechnologies,虽然被纳入免疫学分析,但未在电泳分析中展示。
### 2.2. 蛋白质表征的电泳程序
使用Mini-Protean II(Bio-Rad)系统在17%聚丙烯酰胺分离凝胶上进行SDS-PAGE,监测提取物质量、蛋白质纯度和表观分子量。使用考马斯亮蓝R-250(Merk,Darmstadt,德国)进行染色(CBS)。使用Precision Plus Protein™ All Blue(Bio-Rad,Hercules,CA,USA)分子量标准品作为参照。对纯化蛋白(10 µg)进行双向电泳(2D SDS-PAGE),以分析其等电点(pI)并通过CBS进一步检测。第一维使用ReadyPrep™ 2D起始试剂盒(Bio-Rad)和IPG胶条(Bio-Rad,Hercules,CA,USA),pH 3–10梯度。第二维按上述SDS-PAGE条件进行。
### 2.3. 圆二色光谱
在配备CDF-426S帕尔贴温控系统并与NESLAB RTE111水浴连接的Jasco J-715圆二色光谱仪(Japan Spectroscopic Co.,东京,日本)上进行圆二色(CD)研究。在0.1 cm光程石英比色皿(200 µL)(Hellma,巴登-符腾堡州,德国)中,于20和85°C下记录远紫外CD光谱,蛋白浓度为0.2–0.5 µg/µL。所有样品溶解于20 mM碳酸氢铵(pH 8.0)中。以50 nm/min记录光谱,并减去缓冲液基线。通过在加热或冷却(1°C/min)过程中记录\[θ\]220(固定波长220 nm处的摩尔椭圆度)来监测热变性。结果以平均残基重量(MRW)摩尔椭圆度表示:
(1) \[θ\]~MRW~ = θ × M / (C × l × 10)
其中θ为观测椭圆度,M为每残基平均分子量,C为蛋白浓度(mg/mL),l为光程(cm)。
### 2.4. 2S白蛋白结构特征分析的计算机工具
**信号肽预测:** 基于人工神经网络的Signal P 5.0(ExPASy)在线程序(http://www.cbs.dtu.dk/services/SignalP)。
**序列比对:** 蛋白质序列来自NCBI Protein或UniProt数据库。使用ClustalW程序进行序列比对(https://www.ebi.ac.uk/Tools/msa/clustalo)。
**三级结构预测与展示:** 使用基于蛋白质序列相似性的Swiss-Model工具(ExPASy)进行蛋白质自动建模(https://swissmodel.expasy.org/)。以巴西坚果2S白蛋白Ber e 1作为模板(2LVF,PDB)。
### 2.5. 患者血清的蛋白质印迹
使用过敏患者血清检测和表征潜在的致敏性。患者来自马德里五家医院的过敏科。所有患者均签署书面知情同意书。本研究按照马德里康普顿斯大学的伦理指南进行。免疫分析使用的血清池由四名患者的血清组成,其具体临床特征已在该团队的前期工作中描述\[12,13,14\]。一般而言,他们报告对单一来源的食物过敏,皮肤点刺试验(SPT,风团直径>3 mm)呈阳性和/或通过ImmunoCAP(Thermo Scientific,Rockford,IL,USA)测定的sIgE水平(>1 kU/L)升高。根据患者描述的食物过敏来源将患者血清混合:花生、腰果、榛子、芥菜籽、松子、南瓜籽或亚麻籽。非特应性个体的血清作为免疫分析的阴性对照。
将纯化蛋白(2 µg)在SDS-PAGE后转印至硝酸纤维素膜(GE Healthcare Life Sciences,Marlborough,MA,USA)上。使用单一患者血清或两名患者血清的等体积混合液进行蛋白质免疫检测,两者均以含0.1% Tween20的PBS(PBS-T)中的3%脱脂奶粉(SMP)按1:5稀释。使用小鼠抗人IgE单克隆抗体(1:5000稀释,由ALK-Abelló(马德里,西班牙)惠赠)检测人IgE的结合,随后使用辣根过氧化物酶标记的兔抗小鼠IgG多克隆抗体(1:2000稀释;Pierce,Rockford,IL,USA)。通过ECL蛋白质印迹试剂显色化学发光信号,并在发光成像分析仪LAS3000(Fujifilm,东京,日本)中检测。使用计算机程序Multigauge V3.0(Fujifilm,东京,日本)对信号进行三次重复定量。
## 3. 结果
### 3.1. 分离的2S白蛋白的实验表征
#### 3.1.1. 2S白蛋白的多态性
为阐明和比较2S白蛋白家族的结构特征,从相应来源获得了十二种2S白蛋白:Ana o 3(腰果)、Pis v 1(开心果)、杏仁2S白蛋白、Cor a 14(榛子)、Jug r 1(核桃)、Pin p 1(松子)、Sin a 1(芥菜籽)、Lin u 1(亚麻籽)、Ses i 1(芝麻)、Cuc ma 5(南瓜籽)、甜瓜2S白蛋白和Act d 13(猕猴桃籽)。所有分离蛋白的SDS-PAGE显示分子量较低,范围为12至15 kDa(图1A)。在还原剂βME存在下,十二种2S白蛋白中有十种被裂解为两条多肽链:一条约8–10 kDa的重链和一条约3–5 kDa的轻链,这是这些过敏原的共同特征(图1B)。正如预期,核桃和松子白蛋白Jug r 1和Pin p 1在还原条件下如先前报道\[15,16\]显示为单条多肽链。然而,还原条件下链内二硫键的断裂改变了它们的电泳迁移率。此外,这种行为与Ana o 3和Cor a 14观察到的现象形成对比,后两者在其结构中表现出三条多肽链(图1B)。这些结果可能表明这些蛋白质存在异构体,是由于种子中2S白蛋白的不同蛋白水解加工所致。
为评估所有2S白蛋白中异构体的存在,进行了2D SDS-PAGE(图2)。考虑到其一级结构的高度变异性,在所有蛋白质中检测到广泛的等电点(pI)差异。此外,阐明了这些2S白蛋白的多态性(例如Ana o 3、Cor a 14和Cuc ma 5),如多肽链异构体(点数)所示,它们显示相似的分子量但不同的pI值。
#### 3.1.2. 2S白蛋白对热处理的结构响应
通过光谱分析研究了归因于2S白蛋白家族的高热结构稳定性。纯化蛋白的远紫外CD表明,这种行为并不如预期的那样普遍(图3)。所有2S白蛋白均表现出良好的折叠结构,主要由α-螺旋基序组成。Pin p 1表现出比其他人更高的无规卷曲贡献。然而,大多数蛋白质在85°C加热时表现出部分初始结构丧失。一般而言,温度升高影响了这些蛋白质的整体结构。椭圆度的降低和CD光谱最小值的位移表明无规卷曲基序贡献的增加。重要的是,只有Sin a 1、甜瓜籽2S白蛋白和Pin p 1在85°C加热后保留了其原始结构,表明它们在热加工下的结构稳定性。
当冷却回20°C时,只有Cor a 14和Act d 13完全恢复了其初始结构,而杏仁和Cuc ma 5的2S白蛋白部分恢复。值得注意的是,Jug r 1能够在热处理后完全变性和复性。如图3所示,核桃2S白蛋白在85°C加热时椭圆度急剧下降,CD光谱向左位移,表明无规构象贡献增加。当冷却回20°C时,蛋白质完全恢复其初始结构。Pis v 1、Ana o 3、Ses i 1和Lin u 1在热处理后并未完全丧失结构,但在冷却后也未恢复其初始构象。如Ara h 2所报道\[17\],这些蛋白质在高温下可能发生聚集。
### 3.2. 2S白蛋白结构的计算机模拟分析
通过计算方法分析2S白蛋白的一级和三级结构,使用生物信息学工具进行序列比对(GeneDoc)和3D结构预测(Swiss-Prot)。使用SignalP在线工具确定的信号肽未纳入这些分析。
首先对完整氨基酸序列进行序列比对(图4),随后分别对轻链(图5)和重链(图6)进行比对。2S白蛋白由多基因家族编码,经历复杂的加工过程,导致不同生物来源之间的序列相似性较低\[7,8\]。如图4所示,蛋白质序列显示的同源性程度在18–39%左右波动。只有来自开心果和腰果的Pis v 1和Ana o 3达到约62%。一般而言,尽管半胱氨酸模式及其跨越的区域具有保守性,其余序列似乎具有较低的同源性。
考虑轻链比对(图5),同源性百分比低于40%,即使是比较来自系统发育相关来源的链,如Ana o 3和Pis v 1。然而,当分析重链比对(图6)时,Ana o 3和Pis v 1的同源性百分比高达67%,Jug r 1和Cor a 14高达60%。然而,在重链内部存在一个在2S白蛋白之间表现出低相似性的片段,称为"高变区",位于第四和第五个半胱氨酸残基之间。
为更好地理解2S白蛋白之间可能的结构相似性,研究了这些蛋白质的3D结构(图7A)。2S白蛋白的特征是4–5个α-螺旋的紧凑束,带有C末端环。这些蛋白质3D结构之间的高度相似性可能表明它们之间存在保守的结构表位\[18\],即使在氨基酸序列保守性较差的情况下。除了结构表位外,高变区包含这些蛋白质中已描述的一些最具免疫原性的表位\[7,8\],位于第四和第五个螺旋之间的暴露环中(图7B),便于免疫系统接近位于该区域的表位。
总之,尽管2S白蛋白一级结构之间的总体相似性较低,但在序列和结构水平上存在一些保守表位,表明这些蛋白质具有交叉反应潜力,即使是在非相关来源之间。
### 3.3. 2S白蛋白结构与致敏性之间的联系
使用过敏患者血清的免疫学分析可能揭示2S白蛋白的结构特征与免疫原性之间可能的相关性。图8所示的初步分析中,检测到被2S白蛋白致敏患者血清池识别的可能蛋白质簇。首先,观察到松子和亚麻籽的2S白蛋白在其各自患者队列中的独家识别。其他患者组对至少两种或更多不同来源产生反应。
在榛子的情况下,该患者队列仅识别两种蛋白质,Cor a 14和Jug r 1。这表明这两种坚果之间可能存在交叉反应,因为这两种蛋白质在系统发育上相关,并且如前所述具有更高的序列同源性,提示两种蛋白质中存在共享表位。在腰果和开心果(均为漆树科成员)之间获得了类似结果,在相应的患者血清队列中显示Ana o 3和Pis v 1。
此外,对花生、芥菜籽和南瓜籽过敏的患者不仅对其各自的2S白蛋白产生反应,还对来自其他非相关来源的2S白蛋白产生反应,如杏仁、榛子、核桃、芥菜籽和甜瓜籽白蛋白。同样,通过Sin a 1对芥菜籽过敏的患者对核桃、松子、亚麻籽和芝麻白蛋白产生反应。
我们团队先前报道的数据显示,南瓜籽或芥菜籽与松子之间通过其2S白蛋白存在交叉反应\[12,14\],尽管两种过敏原之间的同源性低于50%。这些结果与本文所述结果相结合,表明2S白蛋白的交叉反应潜力比以前认为的更广泛。
## 4. 讨论
研究某些蛋白质致敏性的结构特性一直是近几十年来研究的焦点\[8\]。2S白蛋白作为多种广泛食用的植物性食物中的主要过敏原而备受关注。多项研究报告了2S白蛋白对过敏患者严重全身症状发展的影响\[19,20\]。本工作首次描述了从不同食物中获得的十二种致敏性2S白蛋白,其中一些是最近才引入我们饮食的,如甜瓜籽或南瓜籽。所有蛋白质均通过类似程序(稍作修改)分离并进行了全面表征。这一结构和免疫学层面的比较研究为理解这些蛋白质的结构特征与其对食物过敏的影响之间的关系提供了基础\[21\]。
2S白蛋白属于低分子量蛋白质组分(低于20 kDa)(图A1)。它们在种子和坚果中的丰度与过敏致敏风险增加有关,因为这些蛋白质中的一些几乎占总含量的30%\[22,23\]。2S白蛋白属于多基因家族,经历不同的蛋白水解成熟过程,产生不同的异构体,这导致其相对于其他种子蛋白质的比例更高。
在此,我们证明了Ana o 3、Cor a 14和Cuc ma 5蛋白质中异构体的存在,因为在单向和双向电泳中用还原剂处理时,它们裂解为两条以上不同长度的多肽链。2S白蛋白中的二硫键提供了对热和酶处理稳定的致密结构\[16,24\]。在这方面,我们发现Sin a 1、甜瓜籽2S白蛋白和Pin p 1不受加热影响,保留了其天然结构。然而,CD光谱显示,大多数蛋白质在85°C加热时经历了天然结构的部分丧失,只有一些蛋白质在恢复初始条件后恢复了结构,如Jug r 1、Act d 13和Cor a 14。此外,Ana o 3、Pis v 1和Ses i 1在冷却回20°C时未恢复其初始构象。这种行为先前已在其他2S白蛋白中有描述,将高温下的蛋白质聚集归因于这种结构丧失,从而影响其致敏性,如Starkl等人\[25\]对Ara h 2的报道。
工业中的某些食物加工步骤需要高温。据信,2S白蛋白中呈现的大多数表位由于其结构稳定性而不受影响,因此可被免疫系统识别。然而,过敏原的反应因其所经历的食物加工步骤而异\[26\]。热处理可能导致过敏原在食物基质中其他化合物(例如碳水化合物、脂质等)存在下的化学修饰,改变关键表位或产生新的表位。
在这种情况下,大多数研究都是在花生过敏原中进行的\[27,28\],表明Ara h 2的致敏能力在美拉德反应中某些残基的糖基化后增加\[29\]。未来研究应评估其他广泛来源(如香料或种子,例如芥菜籽或芝麻籽)中的化学修饰,这将提供关于蛋白质致敏性的非常有价值的信息,这些致敏性可能因食物加工或混合物中存在的成分而增强或减弱\[30\],使某些产品对过敏患者更安全或更具风险。
计算机工具有助于深入了解蛋白质的结构特征及其对致敏性的影响\[31\]。氨基酸序列比对显示,只有半胱氨酸模式周围的残基在比较整个序列时表现出更高的同源性。这可能归因于这些残基的结构作用,因为它们参与维持2S白蛋白的三级结构\[32\]。高变区位于这些蛋白质最暴露的区域,呈现最低的同源性值和在一些2S白蛋白中描述的最具免疫原性的表位\[8,33\](图7B)。由于其序列保守性较低,人们曾认为这些表位不涉及交叉反应,而是特应性患者的多重致敏\[8\]。只有系统发育相关的过敏原在该区域表现出更高的相似性,如十字花科2S白蛋白\[34,35\]或漆树科成员\[13\]。
与一级结构不同,3D构象在不同来源的2S白蛋白之间似乎高度保守。最近的研究预测并分析了几种2S白蛋白中已描述的结构表位\[36\],重点关注Ara h 2,因为它与树坚果和芝麻籽白蛋白具有潜在的交叉反应性及其在食物过敏中的临床意义。2S白蛋白表现出的结构构象与也被描述为食物过敏原的其他蛋白质——非特异性脂质转移蛋白(nsLTPs)相似。然而,它们表现出更保守的氨基酸序列,并被认为是参与交叉反应过程的泛过敏原\[37\]。此外,它们结合脂质的能力赋予其抗消化保护作用\[38\]。
一些2S白蛋白与脂质相互作用的能力已被先前描述\[39\],尽管这些过敏原中是否存在特定的脂质结合腔尚未得到明确证实\[40,41\]。就Ber e 1(巴西坚果的主要过敏原和2S白蛋白)而言,已描述其与脂质的相互作用是针对该过敏原口服致敏及其在小鼠模型中抗酶消化保护所必需的\[41,42\]。需要更多证据来了解脂质相互作用如何影响2S白蛋白的致敏性。
最后,使用过敏患者血清的免疫学分析揭示了2S白蛋白介导的食物过敏中不同的可能场景。对植物来源食物过敏的患者通常对多种来源发生超敏反应。有两种可能的解释:首先,对来自不同来源的几种2S白蛋白的多次独立原发性致敏,它们之间没有免疫学相关性。其次,可能发生白蛋白簇之间的潜在交叉反应过程,即使它们在进化上距离较远。最近已报道两种蛋白质之间存在保守表位\[43\]。
我们团队已报道了这些过敏原的潜在交叉反应及其临床意义\[13\],首次在一组特征良好的患者中描述了腰果-开心果过敏综合征,其严重症状与对漆树科2S白蛋白的致敏及它们之间的交叉反应过程有关。关于2S白蛋白结构的最新信息指出了非相关来源之间存在保守表位。Pin p 1的表位作图揭示了与花生、芝麻籽和榛子等白蛋白的共享表位\[44\],而对过敏患者进行的研究显示Pin p 1与Sin a 1\[12\]和Cuc ma 5\[14\]存在交叉反应。这些结果支持2S白蛋白中存在保守表位。它们对更大患者队列临床表现的影响将提供可用于临床水平以改善患者诊断和管理的有用信息。
未来研究应评估体外结果是否可以外推至患者的临床表现,或者2S白蛋白之间的这种交叉反应是否仍停留在实验阶段而无临床相关性。
## 5. 结论
一组高纯度食物过敏原的获得使得能够利用生化、光谱、免疫学和计算机模拟技术对其进行结构表征。这些分析的结果在理解蛋白质结构特征如何参与其致敏能力方面向前迈进了一步:丰度、多态性、结构稳定性以及表位的分布和保存。使用小规模过敏患者队列的免疫学分析使得能够建立不同来源2S白蛋白之间的潜在致敏关联。尽管本工作首次将十二种同一家族过敏原的结构和免疫学特征汇集在一起,但仍需要更广泛的过敏人群的临床研究来证实其交叉反应潜力的临床相关性。
然而,本工作强调了2S白蛋白作为食物过敏标志物的重要性,不仅限于真正的致敏,还涉及潜在的交叉反应过程。将这些蛋白质用于组分解析诊断等分子诊断方法可能改善患者的表征、诊断和治疗。
## 致谢
我们要感谢Sara Abián和马德里康普顿斯大学蛋白质组学单元提供的出色技术支持。感谢Begoña Lavin对稿件进行的宝贵的英语语言编辑。
**出版商声明:** MDPI对已出版地图和机构隶属关系中的管辖权主张保持中立。
## 作者贡献
**概念化:** C.B.-D.、J.C.-H.和M.V.;**方法学:** C.B.-D.、J.P.、E.B.;**软件:** C.B.-D.、L.M.-P.;**验证:** C.B.-D.、L.M.-P.、C.P.-V.;**形式分析:** C.B.-D.、L.M.-P.、J.P.;**调查:** C.B.-D.、M.V.;**资源:** J.C-H.、B.C.、M.V.;**数据整理:** C.B.-D.、M.V.;**写作——原稿准备:** C.B.-D.、M.V.;**写作——审阅与编辑:** C.B.-D.、J.P.、C.P.-V.、B.C.、J.C.-H.、E.B.、M.V.;**监督:** M.V.;**资金获取:** M.V.。所有作者均已阅读并同意稿件发表版本。
## 基金资助
本工作由西班牙经济部和竞争力部拨款SAF2017-86483-R以及ISCIII与FEDER基金共同资助的主题网络和合作研究中心ARADyAL(RD16/0006/0013;RD16/0006/0014)支持。CB-D由西班牙教育部FPU奖学金(FPU15/0100)资助。
## 数据可用性声明
本研究中提供的数据可根据要求从通讯作者处获取。
## 利益冲突
作者声明无利益冲突。
## 附录A
**图A1** 植物来源总蛋白提取物的SDS-PAGE图谱。电泳在非还原(-βME)(A)和还原(+βME)(B)条件下进行,后者通过用还原剂βME在90°C处理样品10分钟实现。